SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
14._RUQ_847
__AAGGCT______TT________TTAG
15._RUQ_847B
____GG________TT__TT__AA__AG
16._RUQ_847
____GG________TT__TT__AA__AG
17._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
18._RUQ_847
____CC__________________TT__
19._ICS_1
CTGGGGCTTTACTTTTCCCCAAGGCCAG
20._ICS1
____CG__________________CC__
21._RUQ_847
AAAACCAGAAAAGGAA____AAAAAAAG
22._MITC-000297
AAAACCAGAAAAGGAA____AAAAAAAG
23._ICS_1_Fld#_73_Plt#_2
AAAACCAGAAAAGGAA____AAAAAAAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
4._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
5._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._ICS_1
TTAAGGTTCCCGGTGGTTAC__TTTTCC
11._NA
TTAAGGTTCCCGGTGGTTAC__TTTTCC
12._ICS_1
TTAAGGTTCC__GTGGTTACCCTTTTCC
13._RUQ_847
TTAAGGTTCCCGGTGGTTACCCTTTTCC
14._RUQ_847
________CCCGGT__TTAACCTTTTCC
15._RUQ_847B
__________CGGTGG__ACCC____AC
16._RUQ_847
__________CGGTGG__ACCC____AC
17._RUQ_847
TTAAGGTTCCCGGTGGCTACCCTTCTCC
18._RUQ_847
TT______CCCG______ACCC______
19._ICS_1
TTAACGTTCCGGGGAATTCCCGGGCTAA
20._ICS1
CT______CTCG______CCCC______
21._RUQ_847
AAAAGGAAGGCGAC__AAACCCAA__CC
22._MITC-000297
AAAAGGAAGGCGAC__AAACCCAA__CC
23._ICS_1_Fld#_73_Plt#_2
AAAAGGAAGGCGAC__AAACCCAA__CC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
4._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._ICS_1
__GGATCTAGCGAACCGTAAATGGX_XX_X
13._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._RUQ_847
AG__ATCTAGCGAACCGTAA____X_XX_X
15._RUQ_847B
________AG________AA____X_XX_X
16._RUQ_847
________AG________AA____X_XX_X
17._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
18._RUQ_847
____AT__AGCGAACC__AA____X_XX_X
19._ICS_1
AGGGAACCAACCAACCGTACATGGX_XX_X
20._ICS1
____TT__AGCGACCT__CC____X_XX_X
21._RUQ_847
__GGATAGAGCGAAGGACAAATGGX_XX_X
22._MITC-000297
__GGATAGAGCGAAGGACAAATGGX_XX_X
23._ICS_1_Fld#_73_Plt#_2
__GGATAGAGCGAAGGACAAATGGX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

1._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

11._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

13._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847B

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._ICS_1 RUQ_847

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

19._ICS_1

62.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 ICS1

57.7 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._ICS_1 MITC-000297

54.3 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._ICS_1 ICS_1_Fld#_73_Plt#_2

54.3 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25