SNP Profiles of ICS 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
2._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
16._RUQ_847	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
17._RUQ_847	__	__	CC	__	__	__	__	__	__	__	__	__	TT	__
18._ICS1	__	__	CG	__	__	__	__	__	__	__	__	__	CC	__
19._RUQ_847B	__	__	GG	__	__	__	__	TT	__	TT	__	AA	__	AG
20._RUQ_847	__	__	GG	__	__	__	__	TT	__	TT	__	AA	__	AG
21._RUQ_847	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG
22._MITC-000297	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG
23._ICS_1_Fld#_73_Plt#_2	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
1._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	TT	CT	CC
2._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
3._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	__	TT	TT	CC
4._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	__	TT	TT	CC
5._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
6._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
7._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
8._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
9._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
10._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
11._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
12._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
13._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
14._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
15._ICS_1	TT	AA	GG	TT	CC	__	GT	GG	TT	AC	CC	TT	TT	CC
16._RUQ_847	__	__	__	__	CC	CG	GT	__	TT	AA	CC	TT	TT	CC
17._RUQ_847	TT	__	__	__	CC	CG	__	__	__	AC	CC	__	__	__
18._ICS1	CT	__	__	__	CT	CG	__	__	__	CC	CC	__	__	__
19._RUQ_847B	__	__	__	__	__	CG	GT	GG	__	AC	CC	__	__	AC
20._RUQ_847	__	__	__	__	__	CG	GT	GG	__	AC	CC	__	__	AC
21._RUQ_847	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	CC	AA	__	CC
22._MITC-000297	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	CC	AA	__	CC
23._ICS_1_Fld#_73_Plt#_2	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	CC	AA	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
1._RUQ_847	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
2._RUQ_847	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
3._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
4._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
5._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
6._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
7._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
8._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
9._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
10._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
11._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
12._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
13._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
14._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
15._ICS_1	__	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
16._RUQ_847	AG	__	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X
17._RUQ_847	__	__	AT	__	AG	CG	AA	CC	__	AA	__	__	X_X	X_X
18._ICS1	__	__	TT	__	AG	CG	AC	CT	__	CC	__	__	X_X	X_X
19._RUQ_847B	__	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X
20._RUQ_847	__	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X
21._RUQ_847	__	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X
22._MITC-000297	__	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X
23._ICS_1_Fld#_73_Plt#_2	__	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X

Input profile: ICS_1

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._ICS_1 RUQ_847

65 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_1 RUQ_847

63.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_1

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

4._ICS_1 NA

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._ICS_1 NA

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

6._ICS_1

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

7._ICS_1

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

8._ICS_1

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

9._ICS_1

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

10._ICS_1

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

11._ICS_1 NA

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._ICS_1 NA

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._ICS_1 NA

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._ICS_1 NA

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

15._ICS_1

61.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

16._ICS_1 RUQ_847

60.4 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._ICS_1 RUQ_847

57.7 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

18._ICS_1 ICS1

53.8 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

19._ICS_1 RUQ_847B

50 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._ICS_1 RUQ_847

50 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.578 Cri
0.416

21._ICS_1 RUQ_847

32.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_1 MITC-000297

32.9 %
35 shared markers

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USDA-SHRS, United States of America

23._ICS_1 ICS_1_Fld#_73_Plt#_2

32.9 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25