SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
25._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
26._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
27._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGG__
28._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GU_261_/P___
CC__CCCCTTTTTTCCCCAAGGCCGGCC
30._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_261_/P___
CCGGCCCCTTTTTTCCCC__GGCCGGCC
32._GU_261_/P___
__GGCCCC____TT________CCGG__
33._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
34._GU_261_/P___
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
35._GU_261_/P___
CC__CCCCTTTTGTCCCC__GGCCGGCC
36._GU_261_/P___
____CC______TT__CC__GG__GG__
37._GU_261_/P___
____GG________________CC__CC
38._GU_261_/P___
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAGG
1._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
2._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
3._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
4._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
5._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
6._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
7._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
8._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
9._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
10._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
11._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
12._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
13._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
14._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
15._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
16._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
17._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
18._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
19._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
20._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
21._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
22._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
23._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
24._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
25._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
26._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
27._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
28._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCC__GG
29._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
30._GU_261_/P___
AAGG__CCGGGGAGCCACCCGGCCAAGG
31._GU_261_/P___
AAGGCC__GGGGAGCCACCCGGCCAAGG
32._GU_261_/P___
______CCGGGG__CCACCCGGCCAAGG
33._GU_261_/P___
AAGGCCCCGGGGAACCACCCGGCCAAGG
34._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
35._GU_261_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAGG
36._GU_261_/P___
________GGGGAA__ACCC____AA__
37._GU_261_/P___
______CCCC______ACCC________
38._GU_261_/P___
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
5._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
14._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
15._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
16._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
17._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
18._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
19._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
20._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
21._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
22._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
23._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
24._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
25._GU_261_/P___
GGAACCGGCCAA__TTAAAAGGX_XX_XX_X
26._GU_261_/P___
GGAACCGGCCAA__TTAAAAGGX_XX_XX_X
27._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
28._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
29._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
30._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
31._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
32._GU_261_/P___
__AACCGGCCAATTTTAA____X_XX_XX_X
33._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
34._GU_261_/P___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
35._GU_261_/P___
GGAACCGGCCAC__TTAAAAGGX_XX_XX_X
36._GU_261_/P___
______GG________AA____X_XX_XX_X
37._GU_261_/P___
__AA__GGGGAATT__AA____X_XX_XX_X
38._GU_261_/P___
GGAAGGGGGGAAAAAAAAAAGGX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

1._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

2._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

3._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

4._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

5._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

6._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

7._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

8._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

9._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

10._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

11._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

12._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

13._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

14._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

15._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

16._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

17._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

18._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

19._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

20._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

21._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

22._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

23._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

24._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

26._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

27._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

28._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

29._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

30._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25