SNP Profiles of GU 261 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
1._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
2._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
3._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
4._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
5._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
6._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
7._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
8._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
9._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
10._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
11._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
12._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
13._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
14._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
15._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
16._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
17._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
18._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
19._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
20._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
21._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
22._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
23._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
24._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
25._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
26._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
27._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
28._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
29._GU_261_/P
CC__CCCCTTTTTTCCCCAAGGCCGGAA
30._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
31._GU_261_/P
CCGGCCCCTTTTTTCCCC__GGCCGGAA
32._RUQ_1370
__GGCCCC____TT________CCGG__
33._RUQ_1370
CCGGCCCCTTTTTTCCCCAAGGCCGGAA
34._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGAA
35._GU_261_/P
CC__CCCCTTTTGTCCCC__GGCCGGAA
36._RUQ_1370
____CC______TT__CC__GG__GG__
37._RUQ_1370
____GG________________CC____
38._RUQ_1370
GGGGGGGGAAAAAA____AAGGGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCGGGGAGCCACCCGGCCAAGGGG
1._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
2._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
3._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
4._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
5._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
6._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
7._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
8._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
9._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
10._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
11._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
12._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
13._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
14._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
15._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
16._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
17._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
18._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
19._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
20._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
21._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
22._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
23._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
24._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
25._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
26._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
27._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
28._GU_261_/P
GGCCCCGGGGAGCCACCCGGCC__GGGG
29._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
30._GU_261_/P
GG__CCGGGGAGCCACCCGGCCAAGGGG
31._GU_261_/P
GGCC__GGGGAGCCACCCGGCCAAGGGG
32._RUQ_1370
____CCGGGG__CCACCCGGCCAAGG__
33._RUQ_1370
GGCCCCGGGGAACCACCCGGCCAAGGGG
34._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
35._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
36._RUQ_1370
______GGGGAA__ACCC____AA____
37._RUQ_1370
____CCCC______ACCC__________
38._RUQ_1370
GGGGGGCCCC__GGACCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
14._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
15._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
16._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
17._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
18._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
19._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
20._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
21._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
22._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
23._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
24._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
25._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
26._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
27._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
28._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
29._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._RUQ_1370
AACCGGCCAATTTTAA____X_XX_XX_XX_X
33._RUQ_1370
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
34._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
35._GU_261_/P
AACCGGCCAC__TTAAAAGGX_XX_XX_XX_X
36._RUQ_1370
____GG________AA____X_XX_XX_XX_X
37._RUQ_1370
AA__GGGGAATT__AA____X_XX_XX_XX_X
38._RUQ_1370
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

1._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

2._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

3._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

4._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

5._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

6._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

7._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

8._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

9._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

10._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

11._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

12._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

13._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

17._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

18._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

19._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

20._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

21._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

22._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

23._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

24._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

26._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

27._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

28._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

29._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

30._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

75 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

48.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25