SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
1._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
2._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
3._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
4._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
5._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
6._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
7._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
8._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
9._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
10._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
11._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
12._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
13._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
14._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
15._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
16._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
17._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
18._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
19._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
20._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
21._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
22._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
23._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
24._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
25._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
26._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGG__AA
27._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
28._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
29._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
30._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
31._GU_261_/P___
CCCCCCTTTTTTCCCC__GGCCGGCCAA
32._GU_261_/P___
__CCCC____TT________CCGG____
33._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
34._GU_261_/P___
CCCCCCTTTTTTCCCCAAGGCCAGCCAA
35._GU_261_/P___
CCCCCCTTTTGTCCCC__GGCCGGCCAA
36._GU_261_/P___
__CC______TT__CC__GG__GG____
37._GU_261_/P___
__GG________________CC__CC__
38._GU_261_/P___
GGGGGGAAAAAA____AAGGGGGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCGGGGAGCCACCCGGCCAAGGGG
1._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
2._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
3._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
4._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
5._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
6._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
7._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
8._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
9._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
10._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
11._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
12._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
13._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
14._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
15._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
16._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
17._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
18._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
19._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
20._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
21._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
22._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
23._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
24._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
25._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
26._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
27._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
28._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
29._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCC__GGGG
30._GU_261_/P___
GG__CCGGGGAGCCACCCGGCCAAGGGG
31._GU_261_/P___
GGCC__GGGGAGCCACCCGGCCAAGGGG
32._GU_261_/P___
____CCGGGG__CCACCCGGCCAAGG__
33._GU_261_/P___
GGCCCCGGGGAACCACCCGGCCAAGGGG
34._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
35._GU_261_/P___
GGCCCCGGGGAGCCACCCGGCCAAGGGG
36._GU_261_/P___
______GGGGAA__ACCC____AA____
37._GU_261_/P___
____CCCC______ACCC__________
38._GU_261_/P___
GGGGGGCCCC__GGACCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
14._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
15._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
16._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
17._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
18._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
19._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
20._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
21._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
22._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
23._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
24._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
25._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
26._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
27._GU_261_/P___
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
28._GU_261_/P___
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
29._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._GU_261_/P___
AACCGGCCAATTTTAA____X_XX_XX_XX_X
33._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
34._GU_261_/P___
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
35._GU_261_/P___
AACCGGCCAC__TTAAAAGGX_XX_XX_XX_X
36._GU_261_/P___
____GG________AA____X_XX_XX_XX_X
37._GU_261_/P___
AA__GGGGAATT__AA____X_XX_XX_XX_X
38._GU_261_/P___
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

1._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

2._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

3._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

4._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

5._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

6._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

7._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

8._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

9._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

10._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

11._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

12._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

13._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

17._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

18._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

19._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

20._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

21._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

22._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

23._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

24._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

26._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

27._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

28._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

29._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

30._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

45.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25