SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
1._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
2._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
3._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
4._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
5._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
6._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
7._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
8._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
9._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
10._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
11._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
12._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
13._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
14._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
15._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
16._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
17._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
18._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
19._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
20._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
21._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
22._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
23._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
24._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
25._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
26._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGG__AA
27._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
28._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
29._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
30._GU_261_/P___
CC__CCCCTTTTTTCCCCGGCCGGCCAA
31._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
32._GU_261_/P___
__GGCCCC____TT______CCGG____
33._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
34._GU_261_/P___
CCGGCCCCTTTTTTCCCCGGCCAGCCAA
35._GU_261_/P___
CC__CCCCTTTTGTCCCCGGCCGGCCAA
36._GU_261_/P___
____CC______TT__CCGG__GG____
37._GU_261_/P___
____GG______________CC__CC__
38._GU_261_/P___
GGGGGGGGAAAAAA____GGGGGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCGGGGAGCCACCCGGCCAAGGGGAA
1._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
2._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
3._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
4._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
5._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
6._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
7._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
8._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
9._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
10._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
11._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
12._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
13._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
14._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
15._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
16._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
17._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
18._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
19._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
20._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
21._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
22._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
23._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
24._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
25._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
26._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
27._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
28._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
29._GU_261_/P___
GGCCGGGGAGCCACCCGGCC__GGGGAA
30._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
31._GU_261_/P___
GG__GGGGAGCCACCCGGCCAAGGGGAA
32._GU_261_/P___
____GGGG__CCACCCGGCCAAGG__AA
33._GU_261_/P___
GGCCGGGGAACCACCCGGCCAAGGGGAA
34._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
35._GU_261_/P___
GGCCGGGGAGCCACCCGGCCAAGGGGAA
36._GU_261_/P___
____GGGGAA__ACCC____AA______
37._GU_261_/P___
____CC______ACCC__________AA
38._GU_261_/P___
GGGGCCCC__GGACCCCC__AA__GGAA
 29 30 31 32 33 34 35 36 37      
_Input profile
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
1._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
2._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
3._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
4._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
5._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
6._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
7._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
8._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
9._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
10._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
11._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
12._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
13._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
14._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
15._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
16._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
17._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
18._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
19._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
20._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
21._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
22._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
23._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
24._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
25._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
26._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
27._GU_261_/P___
CCGGCCAA__TTAAAAGGX_XX_XX_XX_XX_X
28._GU_261_/P___
CCGGCCAA__TTAAAAGGX_XX_XX_XX_XX_X
29._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
30._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
31._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
32._GU_261_/P___
CCGGCCAATTTTAA____X_XX_XX_XX_XX_X
33._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
34._GU_261_/P___
CCGGCCAATTTTAAAAGGX_XX_XX_XX_XX_X
35._GU_261_/P___
CCGGCCAC__TTAAAAGGX_XX_XX_XX_XX_X
36._GU_261_/P___
__GG________AA____X_XX_XX_XX_XX_X
37._GU_261_/P___
__GGGGAATT__AA____X_XX_XX_XX_XX_X
38._GU_261_/P___
GGGGGGAAAAAAAAAAGGX_XX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

1._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

2._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

3._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

4._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

5._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

6._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

7._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

8._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

9._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

10._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

11._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

12._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

13._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

17._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

18._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

19._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

20._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

21._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

22._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

23._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

24._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

25._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

26._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

27._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

28._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

29._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

30._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

75 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

46.9 %
32 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP872 18TcSNP723 19TcSNP645 20TcSNP619
21TcSNP591 22TcSNP577 23TcSNP560 24TcSNP534 25TcSNP529
26TcSNP469 27TcSNP429 28TcSNP372 29TcSNP242 30TcSNP230
31TcSNP226 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25