SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTCCTTTTCCCCAAGGCCGG
1._GU_261_/P___
__GGCCCC______TT________CCGG
2._GU_261_/P___
____CC________TT__CC__GG__GG
3._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
4._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
5._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
6._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
7._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
8._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
9._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
10._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
11._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
12._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
13._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
14._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
15._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
16._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
17._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
18._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
19._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
20._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
21._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
22._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
23._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
24._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
25._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
26._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
27._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
28._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
29._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
30._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
31._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
32._GU_261_/P___
CC__CCCCTT__TTTTCCCCAAGGCCGG
33._GU_261_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCGG
34._GU_261_/P___
CCGGCCCCTT__TTTTCCCC__GGCCGG
35._GU_261_/P___
CCGGCCCCTTCCTTTTCCCCAAGGCCAG
36._GU_261_/P___
CC__CCCCTT__TTGTCCCC__GGCCGG
37._GU_261_/P___
____GG__________________CC__
38._GU_261_/P___
GGGGGGGGAACCAAAA____AAGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCGGGGAACCACCCGGCCAA
1._GU_261_/P___
________CCGGGG__CCACCCGGCCAA
2._GU_261_/P___
__________GGGGAA__ACCC____AA
3._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
4._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
5._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
6._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
7._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
8._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
9._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
10._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
11._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
12._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
13._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
14._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
15._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
16._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
17._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
18._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
19._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
20._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
21._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
22._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
23._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
24._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
25._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
26._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
27._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
28._GU_261_/P___
__AAGGCCCCGGGGAGCCACCCGGCCAA
29._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
30._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
31._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCC__
32._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
33._GU_261_/P___
CCAAGG__CCGGGGAGCCACCCGGCCAA
34._GU_261_/P___
CCAAGGCC__GGGGAGCCACCCGGCCAA
35._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
36._GU_261_/P___
CCAAGGCCCCGGGGAGCCACCCGGCCAA
37._GU_261_/P___
CC______CCCC______ACCC______
38._GU_261_/P___
GGAAGGGGGGCCCC__GGACCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
1._GU_261_/P___
GG__AACCGGCCAATTTTAA____X_XX_X
2._GU_261_/P___
________GG________AA____X_XX_X
3._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
4._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
5._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
6._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
7._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
8._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
9._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
10._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
11._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
12._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
13._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
14._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
15._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
16._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
17._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
18._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
19._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
20._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
21._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
22._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
23._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
24._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
25._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
26._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
27._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
28._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
29._GU_261_/P___
GGGGAACCGGCCAA__TTAAAAGGX_XX_X
30._GU_261_/P___
GGGGAACCGGCCAA__TTAAAAGGX_XX_X
31._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
32._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
33._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
34._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
35._GU_261_/P___
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
36._GU_261_/P___
GGGGAACCGGCCAC__TTAAAAGGX_XX_X
37._GU_261_/P___
____AA__GGGGAATT__AA____X_XX_X
38._GU_261_/P___
__GGAAGGGGGGAAAAAAAAAAGGX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_261_/P RUQ_1370

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

4._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

5._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

6._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

7._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

8._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

9._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

10._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

11._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

12._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

13._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

14._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

15._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

16._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

17._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

18._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

19._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

20._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

21._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

22._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

23._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

24._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

25._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

26._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

27._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

28._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

29._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

30._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

31._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

32._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

33._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

34._GU_261_/P

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

35._GU_261_/P

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

36._GU_261_/P

95.8 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25