SNP Profiles of GU 221 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
5._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
6._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
7._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
8._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
9._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
10._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
11._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
12._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
13._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
14._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
15._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
17._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
18._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
19._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
20._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
21._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
22._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
23._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
24._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
25._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
26._RUQ_200
CCAGGGCCTTTTTTCCCCAAGGCCAATT
27._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
28._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
29._RUQ_200
__AGGGCC____TT________CCAA__
30._RUQ_200B
____GG______TT__CC__GG__AA__
31._RUQ_200
____GG______TT__CC__GG__AA__
32._GC-01-75-4-11
GGAGCCGGAAAAAA____AAGGGGAAAA
33._RUQ_200
GGAGCCGGAAAAAA____AAGGGGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAACCCCCCGGCCAAGG
1._GU_221_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
2._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
3._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
4._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
5._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
6._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
7._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
8._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
9._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
10._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
11._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
12._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
13._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
14._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
15._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
16._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
17._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
18._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
19._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
20._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
21._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
22._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
23._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
24._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
25._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
26._RUQ_200
AAGGCCCCGGGGAACCACCCGGCCAAAG
27._GC-01-075-4-11
AAGGCCCCGGGGAG__ACCCGGCCAAAG
28._GU_221_/C
AAGGCCCCGGGGAG__ACCCGGCCAAAG
29._RUQ_200
______CCGGGG__CCACCCGGCCAAAG
30._RUQ_200B
________GGGGAA__ACCC____AA__
31._RUQ_200
________GGGGAA__ACCC____AA__
32._GC-01-75-4-11
AAGGGGGGCCCC__GGACCCCC__AA__
33._RUQ_200
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._GU_221_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
25._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._RUQ_200
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
27._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
28._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
29._RUQ_200
__AACCGGCCAATTTTAA____X_XX_XX_X
30._RUQ_200B
______GG________AA____X_XX_XX_X
31._RUQ_200
______GG________AA____X_XX_XX_X
32._GC-01-75-4-11
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
33._RUQ_200
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_221_/C

 
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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

1._GU_221_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

2._GU_221_/C GC-01-075-4-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._GU_221_/C GC-01-075-4-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

16._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

17._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

18._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

19._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

20._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

21._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

22._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

23._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

24._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

25._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

26._GU_221_/C RUQ_200

85.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._GU_221_/C GC-01-075-4-11

85.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

28._GU_221_/C

85.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

29._GU_221_/C RUQ_200

85.4 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._GU_221_/C RUQ_200B

80.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.997

31._GU_221_/C RUQ_200

80.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._GU_221_/C GC-01-75-4-11

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

42.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25