SNP Profiles of GU 221 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGCCTTTTTTCCCCAAGGCCAATT
1._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
2._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
3._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
4._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
5._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
6._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
7._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
8._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
9._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
10._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
11._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
12._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
13._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
14._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
15._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
17._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
18._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
19._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
20._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
21._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
22._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
23._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
24._GU_221_/C___
__AGGGCC____TT________CCAA__
25._GU_221_/C___
CCAGGGCCTTTTTTCCCCAAGGCCAATT
26._GU_221_/C___
____GG______TT__CC__GG__AA__
27._GU_221_/C___
____GG______TT__CC__GG__AA__
28._GU_221_/C___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GU_221_/C___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
30._GU_221_/C___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_221_/C___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
32._GU_221_/C___
GGAGCCGGAAAAAA____AAGGGGAAAA
33._GU_221_/C___
GGAGCCGGAAAAAA____AAGGGGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAAG
1._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
2._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
3._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
4._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
5._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
6._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
7._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
8._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
9._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
10._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
11._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
12._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
13._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
14._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
15._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
16._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
17._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
18._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
19._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
20._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
21._GU_221_/C___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
22._GU_221_/C___
AAGGCCCCGGGGAG__ACCCGGCCAAAG
23._GU_221_/C___
AAGGCCCCGGGGAG__ACCCGGCCAAAG
24._GU_221_/C___
______CCGGGG__CCACCCGGCCAAAG
25._GU_221_/C___
AAGGCCCCGGGGAACCACCCGGCCAAAG
26._GU_221_/C___
________GGGGAA__ACCC____AA__
27._GU_221_/C___
________GGGGAA__ACCC____AA__
28._GU_221_/C___
AAGGCCCCGGGGAACCCCCCGGCCAAGG
29._GU_221_/C___
AAGGCCCCGGGGAACCCCCCGGCCAAGG
30._GU_221_/C___
AAGGCCCCGGGGAACCCCCCGGCCAAGG
31._GU_221_/C___
AAGGCCCCGGGGAACCCCCCGGCCAAGG
32._GU_221_/C___
AAGGGGGGCCCC__GGACCCCC__AA__
33._GU_221_/C___
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GU_221_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._GU_221_/C___
__AACCGGCCAATTTTAA____X_XX_XX_X
25._GU_221_/C___
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._GU_221_/C___
______GG________AA____X_XX_XX_X
27._GU_221_/C___
______GG________AA____X_XX_XX_X
28._GU_221_/C___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
29._GU_221_/C___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
30._GU_221_/C___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
31._GU_221_/C___
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
32._GU_221_/C___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
33._GU_221_/C___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_221_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

1._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

13._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

14._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

15._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

16._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

17._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

18._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

19._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

20._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

21._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

22._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

24._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._GU_221_/C RUQ_200

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._GU_221_/C RUQ_200B

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

27._GU_221_/C RUQ_200

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

28._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

29._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25