SNP Profiles of GU 221 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGCCTTTTTTCCCCAAGGCCAATT
1._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
2._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
3._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
4._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
5._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
6._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
7._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
8._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
9._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
10._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
11._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
12._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
13._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
14._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
15._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
17._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
18._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
19._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
20._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
21._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
22._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
23._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
24._RUQ_200
__AGGGCC____TT________CCAA__
25._RUQ_200
CCAGGGCCTTTTTTCCCCAAGGCCAATT
26._RUQ_200B
____GG______TT__CC__GG__AA__
27._RUQ_200
____GG______TT__CC__GG__AA__
28._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
30._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
32._GC-01-75-4-11
GGAGCCGGAAAAAA____AAGGGGAAAA
33._RUQ_200
GGAGCCGGAAAAAA____AAGGGGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAAG
1._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
2._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
3._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
4._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
5._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
6._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
7._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
8._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
9._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
10._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
11._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
12._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
13._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
14._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
15._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
16._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
17._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
18._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
19._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
20._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
21._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
22._GC-01-075-4-11
AAGGCCCCGGGGAG__ACCCGGCCAAAG
23._GU_221_/C
AAGGCCCCGGGGAG__ACCCGGCCAAAG
24._RUQ_200
______CCGGGG__CCACCCGGCCAAAG
25._RUQ_200
AAGGCCCCGGGGAACCACCCGGCCAAAG
26._RUQ_200B
________GGGGAA__ACCC____AA__
27._RUQ_200
________GGGGAA__ACCC____AA__
28._GU_221_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
29._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
30._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
31._GU_221_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
32._GC-01-75-4-11
AAGGGGGGCCCC__GGACCCCC__AA__
33._RUQ_200
AAGGGGGGCCCC__GGACCCCC__AA__
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._RUQ_200
__AACCGGCCAATTTTAA____X_XX_XX_X
25._RUQ_200
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._RUQ_200B
______GG________AA____X_XX_XX_X
27._RUQ_200
______GG________AA____X_XX_XX_X
28._GU_221_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
29._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
30._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
31._GU_221_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
32._GC-01-75-4-11
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
33._RUQ_200
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_221_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

1._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

14._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

15._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

16._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

17._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

18._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

19._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

20._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

21._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

22._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

24._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._GU_221_/C RUQ_200

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._GU_221_/C RUQ_200B

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._GU_221_/C RUQ_200

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

28._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

29._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25