SNP Profiles of GU 221 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGCCTTTTTTCCCCAAGGCCAATT
1._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
2._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
3._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
4._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
5._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
6._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
7._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
8._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
9._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
10._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
11._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
12._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
13._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
14._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
15._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
17._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
18._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
19._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
20._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
21._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
22._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
23._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
24._RUQ_200
__AGGGCC____TT________CCAA__
25._RUQ_200
CCAGGGCCTTTTTTCCCCAAGGCCAATT
26._RUQ_200B
____GG______TT__CC__GG__AA__
27._RUQ_200
____GG______TT__CC__GG__AA__
28._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
30._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
32._GC-01-75-4-11
GGAGCCGGAAAAAA____AAGGGGAAAA
33._RUQ_200
GGAGCCGGAAAAAA____AAGGGGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAGACCCGGCCAAAGGG
1._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
2._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
3._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
4._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
5._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
6._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
7._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
8._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
9._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
10._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
11._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
12._GC-01-075-4-11
AAGGCCCCGGGGAGACCCGGCCAAAGGG
13._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
14._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
15._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
16._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
17._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
18._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
19._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
20._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
21._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
22._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
23._GU_221_/C
AAGGCCCCGGGGAGACCCGGCCAAAGGG
24._RUQ_200
______CCGGGG__ACCCGGCCAAAG__
25._RUQ_200
AAGGCCCCGGGGAAACCCGGCCAAAGAG
26._RUQ_200B
________GGGGAAACCC____AA____
27._RUQ_200
________GGGGAAACCC____AA____
28._GU_221_/C
AAGGCCCCGGGGAACCCCGGCCAAGGGG
29._GC-01-075-4-11
AAGGCCCCGGGGAACCCCGGCCAAGGGG
30._GC-01-075-4-11
AAGGCCCCGGGGAACCCCGGCCAAGGGG
31._GU_221_/C
AAGGCCCCGGGGAACCCCGGCCAAGGGG
32._GC-01-75-4-11
AAGGGGGGCCCC__ACCCCC__AA__GG
33._RUQ_200
AAGGGGGGCCCC__ACCCCC__AA__GG
 29303132333435363738    
_Input profile
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
1._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
2._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
3._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
4._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
5._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
6._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
7._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
8._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
9._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
10._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
11._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
12._GC-01-075-4-11
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
13._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
14._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
15._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
16._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
17._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
18._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
19._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
20._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
21._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
22._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
23._GU_221_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
24._RUQ_200
AACCGGCCAATTTTAA____X_XX_XX_XX_X
25._RUQ_200
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
26._RUQ_200B
____GG________AA____X_XX_XX_XX_X
27._RUQ_200
____GG________AA____X_XX_XX_XX_X
28._GU_221_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
29._GC-01-075-4-11
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GC-01-075-4-11
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_221_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._GC-01-75-4-11
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X
33._RUQ_200
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_221_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

1._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

15._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

16._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

17._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

18._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

19._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

20._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

21._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

22._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

23._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

24._GU_221_/C RUQ_200

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._GU_221_/C RUQ_200

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._GU_221_/C RUQ_200B

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._GU_221_/C RUQ_200

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

28._GU_221_/C

85.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

29._GU_221_/C GC-01-075-4-11

85.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

85.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C

85.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

48.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25