SNP Profiles of GU 221 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_200
__AGGGCC______TT________CCAA
2._RUQ_200
____GG________TT__CC__GG__AA
3._RUQ_200B
____GG________TT__CC__GG__AA
4._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
5._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
6._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
7._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
8._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
9._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
10._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
11._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
12._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
13._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
14._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
15._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
16._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
17._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
18._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
19._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
20._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
21._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
22._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
23._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
24._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
25._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
26._GC-01-075-4-11
CCAGGGCCTT__TTTTCCCCAAGGCCAA
27._GU_221_/C
CCAGGGCCTT__TTTTCCCCAAGGCCAA
28._GU_221_/C
CCGGCCCCTT__TTTTCCCCAAGGCCGG
29._GC-01-075-4-11
CCGGCCCCTT__TTTTCCCCAAGGCCGG
30._GC-01-075-4-11
CCGGCCCCTT__TTTTCCCCAAGGCCGG
31._GU_221_/C
CCGGCCCCTT__TTTTCCCCAAGGCCGG
32._GC-01-75-4-11
GGAGCCGGAACCAAAA____AAGGGGAA
33._RUQ_200
GGAGCCGGAACCAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCCCCGGGGAACCACCCGGCCAA
1._RUQ_200
________CCGGGG__CCACCCGGCCAA
2._RUQ_200
__________GGGGAA__ACCC____AA
3._RUQ_200B
__________GGGGAA__ACCC____AA
4._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
5._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
6._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
7._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
8._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
9._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
10._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
11._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
12._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
13._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
14._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
15._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
16._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
17._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
18._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
19._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
20._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
21._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
22._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
23._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
24._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
25._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
26._GC-01-075-4-11
TTAAGGCCCCGGGGAG__ACCCGGCCAA
27._GU_221_/C
TTAAGGCCCCGGGGAG__ACCCGGCCAA
28._GU_221_/C
CCAAGGCCCCGGGGAACCCCCCGGCCAA
29._GC-01-075-4-11
CCAAGGCCCCGGGGAACCCCCCGGCCAA
30._GC-01-075-4-11
CCAAGGCCCCGGGGAACCCCCCGGCCAA
31._GU_221_/C
CCAAGGCCCCGGGGAACCCCCCGGCCAA
32._GC-01-75-4-11
AAAAGGGGGGCCCC__GGACCCCC__AA
33._RUQ_200
AAAAGGGGGGCCCC__GGACCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_200
AG__AACCGGCCAATTTTAA____X_XX_X
2._RUQ_200
________GG________AA____X_XX_X
3._RUQ_200B
________GG________AA____X_XX_X
4._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
24._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
25._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
26._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
27._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
28._GU_221_/C
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
29._GC-01-075-4-11
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
30._GC-01-075-4-11
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
31._GU_221_/C
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
32._GC-01-75-4-11
__GGAAGGGGGGAAAAAAAAATGGX_XX_X
33._RUQ_200
__GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_221_/C RUQ_200

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_221_/C RUQ_200

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_221_/C RUQ_200

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_221_/C RUQ_200B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.997

4._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

16._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

17._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

18._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

19._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

20._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

21._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

22._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

23._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

24._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

25._GU_221_/C

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

26._GU_221_/C GC-01-075-4-11

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

27._GU_221_/C

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

28._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

29._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C

85.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25