SNP Profiles of GU 171/C   View Data

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 Key

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_Input profile
CCAAGGCCTTTTTTCCCCAAGGCCAATT
1._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
2._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
3._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
4._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
5._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
6._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
7._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
8._GC-01-094-5-11
CCAAGGCCTTTTTTCCCCAAGGCCAATT
9._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
10._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
11._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
12._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
13._GU_171_/C
CCAAGGCCTTTTTTCCCCAAGGCCAATT
14._RUQ_195
_AAGGCC__TT____CCAA_
15._RUQ_195
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._RUQ_195
__GG___TT_CC_GG_AA_
17._GC-01-94-5-11
GGAACCGGAAAAAA__AAGGGGAAAA
18._GC-01-94-5-11
GGAACCGGAAAAAA__AAGGGGAAAA
19._RUQ_195
GGAACCGGAAAAAA__AAGGGGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
1._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
2._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
3._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
4._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
5._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
6._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
7._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
8._GC-01-094-5-11
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
9._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
10._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
11._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
12._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
13._GU_171_/C
AAGGCCCCGGGGGGCCCCCCGGCCAAAG
14._RUQ_195
___CCGGGG_CCCCCCGGCCAAAG
15._RUQ_195
AAGGCCCCGGGGAACCCCCCGGCCAAAG
16._RUQ_195
____GGGGAA_CCCC____
17._GC-01-94-5-11
AAGGGGGGCCCC_GGCCCCCC_AA_
18._GC-01-94-5-11
AAGGGGGGCCCC_GGCCCCCC_AA_
19._RUQ_195
AAGGGGGGCCCC_GGCCCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
1._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
2._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
3._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
4._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
5._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
6._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
7._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
8._GC-01-094-5-11
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
9._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
10._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
11._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
12._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
13._GU_171_/C
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
14._RUQ_195
_AACCGGCCAATTTTAA__X_XX_XX_X
15._RUQ_195
AGAACCGGCCAATTTTAATTGGX_XX_XX_X
16._RUQ_195
___GG____AA__X_XX_XX_X
17._GC-01-94-5-11
GGAAGGGGGGAAAAAAAATTGGX_XX_XX_X
18._GC-01-94-5-11
GGAAGGGGGGAAAAAAAATTGGX_XX_XX_X
19._RUQ_195
GGAAGGGGGGAAAAAAAATTGGX_XX_XX_X

Input profile: GU_171_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

1._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

2._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

8._GU_171_/C GC-01-094-5-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

14._GU_171_/C RUQ_195

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

91.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._GU_171_/C GC-01-94-5-11

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

19._GU_171_/C RUQ_195

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25