SNP Profiles of GU 171/C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
1._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
2._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
3._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
4._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
5._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
6._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
7._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
8._GC-01-094-5-11	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
9._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
10._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
11._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
12._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
13._GU_171_/C	CC	AA	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
14._RUQ_195	__	AA	GG	CC	__	__	TT	__	__	__	__	CC	AA	__
15._RUQ_195	CC	AG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	TT
16._RUQ_195	__	__	GG	__	__	__	TT	__	CC	__	GG	__	AA	__
17._GC-01-94-5-11	GG	AA	CC	GG	AA	AA	AA	__	__	AA	GG	GG	AA	AA
18._GC-01-94-5-11	GG	AA	CC	GG	AA	AA	AA	__	__	AA	GG	GG	AA	AA
19._RUQ_195	GG	AA	CC	GG	AA	AA	AA	__	__	AA	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
1._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
2._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
3._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
4._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
5._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
6._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
7._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
8._GC-01-094-5-11	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
9._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
10._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
11._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
12._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
13._GU_171_/C	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	AG
14._RUQ_195	__	__	__	CC	GG	GG	__	CC	CC	CC	GG	CC	AA	AG
15._RUQ_195	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	AG
16._RUQ_195	__	__	__	__	GG	GG	AA	__	CC	CC	__	__	__	__
17._GC-01-94-5-11	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA	__
18._GC-01-94-5-11	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA	__
19._RUQ_195	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
1._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
2._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
3._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
4._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
5._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
6._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
7._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
8._GC-01-094-5-11	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
9._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
10._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
11._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
12._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
13._GU_171_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
14._RUQ_195	__	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X	X_X
15._RUQ_195	AG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
16._RUQ_195	__	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X	X_X
17._GC-01-94-5-11	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X
18._GC-01-94-5-11	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X
19._RUQ_195	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X

Input profile: GU_171_/C

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Mars Center for Cocoa Science, Brazil

Location: 1511 2 > FP

Dapeng Zhang, 2016

1._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 10 > F

Dapeng Zhang, 2016

2._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

4._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

5._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

7._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

8._GU_171_/C GC-01-094-5-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 7

Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 9

Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 12

Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 14

Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 1 > FP

Dapeng Zhang, 2016

14._GU_171_/C RUQ_195

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.996

17._GU_171_/C GC-01-94-5-11

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

18._GU_171_/C GC-01-94-5-11

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

19._GU_171_/C RUQ_195

47.1 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25