SNP Profiles of GU 168 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._RUQ_223
__AGGGCC____TT________CCAG__
21._RUQ_223
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
22._RUQ_223
____GG______TT__CC__GG__AG__
23._GU_168_/H
TTAAGGCTTTCCTTCCTTAAAACCGGTT
24._GC-03-023-2-12
TTAAGGCTTTCCTTCCTTAAAACCGGTT
25._GC-03-23-2-12
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
1._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
2._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
3._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
4._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
5._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
6._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
7._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
8._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
9._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
10._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
11._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
12._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
13._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
14._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
15._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
16._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
17._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
18._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
19._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
20._RUQ_223
______CCGGGG__CCCCGGCCAAAG__
21._RUQ_223
AAGGCCCCGGGGAACCCCGGCCAAAGAG
22._RUQ_223
________GGGGAA__CC____AA____
23._GU_168_/H
AACCTTCCGGGGGGTTCCTTTTCCAAGG
24._GC-03-023-2-12
AACCTTCCGGGGGGTTCCTTTTCCAAGG
25._GC-03-23-2-12
AAGGGGGGCCCC__GGCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
1._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
2._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
3._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
4._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
5._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
6._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
7._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
8._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
9._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
10._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
11._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
12._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
13._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
14._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
15._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
16._GC-03-023-2-12
AACCGGCCAA__TTAATTGGX_XX_XX_XX_X
17._GC-03-023-2-12
AACCGGCCAATTTT__TTGGX_XX_XX_XX_X
18._GU_168_/H
AACCGGCCAATTTT__TTGGX_XX_XX_XX_X
19._GU_168_/H
AACCGGCCAA__TTAATTGGX_XX_XX_XX_X
20._RUQ_223
AACCGGCCAATTTTAA____X_XX_XX_XX_X
21._RUQ_223
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
22._RUQ_223
____GG________AA____X_XX_XX_XX_X
23._GU_168_/H
AACCAACCAACCTTACTTGGX_XX_XX_XX_X
24._GC-03-023-2-12
AACCAACCAACCTTACTTGGX_XX_XX_XX_X
25._GC-03-23-2-12
AAGGGGGGAAAAAAAATTGGX_XX_XX_XX_X

Input profile: GU_168_/H

 
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Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

1._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

9._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

10._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

11._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

12._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

13._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

14._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

15._GU_168_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

16._GU_168_/H GC-03-023-2-12

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._GU_168_/H

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

19._GU_168_/H

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

89.1 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.2 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

83.3 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.997

23._GU_168_/H

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

24._GU_168_/H GC-03-023-2-12

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._GU_168_/H GC-03-23-2-12

45.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25