SNP Profiles of GU 168/H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._RUQ_223
__AGGGCC____TT________CCAG__
21._RUQ_223
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
22._RUQ_223
____GG______TT__CC__GG__AG__
23._GU_168_/H
TTAAGGCTTTCCTTCCTTAAAACCGGTT
24._GC-03-023-2-12
TTAAGGCTTTCCTTCCTTAAAACCGGTT
25._GC-03-23-2-12
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
1._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
2._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
3._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
4._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
5._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
6._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
7._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
8._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
9._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
10._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
11._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
12._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
13._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
14._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
15._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
16._GC-03-023-2-12
AAGGCCCCGGGGAGCCCC__GGCCAAGG
17._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
18._GU_168_/H
AAGGCCCCGGGGAGCCCC__GGCCAAGG
19._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
20._RUQ_223
______CCGGGG__CCCCCCGGCCAAAG
21._RUQ_223
AAGGCCCCGGGGAACCCCCCGGCCAAAG
22._RUQ_223
________GGGGAA__CCCC____AA__
23._GU_168_/H
AACCTTCCGGGGGGTTCCCCTTTTCCAA
24._GC-03-023-2-12
AACCTTCCGGGGGGTTCCCCTTTTCCAA
25._GC-03-23-2-12
AAGGGGGGCCCC__GGCCCCCC__AA__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
1._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
2._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
3._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
4._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
5._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
6._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
7._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
8._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
9._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
10._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
11._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
12._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
13._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
14._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
15._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
16._GC-03-023-2-12
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
17._GC-03-023-2-12
GGAACCGGCCAA__TTTTGGX_XX_XX_XX_X
18._GU_168_/H
GGAACCGGCCAATTTTTTGGX_XX_XX_XX_X
19._GU_168_/H
GGAACCGGCCAA__TTTTGGX_XX_XX_XX_X
20._RUQ_223
__AACCGGCCAATTTT____X_XX_XX_XX_X
21._RUQ_223
AGAACCGGCCAATTTTATGGX_XX_XX_XX_X
22._RUQ_223
______GG____________X_XX_XX_XX_X
23._GU_168_/H
GGAACCAACCAACCTTTTGGX_XX_XX_XX_X
24._GC-03-023-2-12
GGAACCAACCAACCTTTTGGX_XX_XX_XX_X
25._GC-03-23-2-12
GGAAGGGGGGAAAAAATTGGX_XX_XX_XX_X

Input profile: GU_168_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

1._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

9._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

10._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

11._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

12._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

13._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

14._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

15._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

16._GU_168_/H GC-03-023-2-12

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

19._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

89.1 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.2 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

83.3 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

23._GU_168_/H

55.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

24._GU_168_/H GC-03-023-2-12

55.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._GU_168_/H GC-03-23-2-12

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP32 38TcSNP25