SNP Profiles of GU 147 /H View Data

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_Input profile	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
1._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
2._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
3._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
4._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
5._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
6._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
7._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
8._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
9._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
10._GC-01-080-4-16	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
11._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
12._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
13._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
14._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
15._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
16._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
17._GU_147_/H	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
18._RUQ_222	__	GG	CC	CC	__	__	TT	__	__	__	__	CC	GG	__
19._RUQ_222	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
20._RUQ_222	__	__	CC	__	__	__	TT	__	CC	__	GG	__	GG	__
21._GC-01-80-4-16	GG	GG	GG	GG	AA	AA	AA	__	__	AA	GG	GG	GG	GG
22._RUQ_222	GG	AG	CC	GG	AA	AA	AA	__	__	AA	GG	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
1._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
2._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
3._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
4._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
5._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
6._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
7._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
8._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
9._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
10._GC-01-080-4-16	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
11._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
12._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
13._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
14._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
15._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
16._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
17._GU_147_/H	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA	GG
18._RUQ_222	__	__	__	CC	GG	GG	__	CT	AA	CC	GG	CC	AA	GG
19._RUQ_222	AA	GG	CC	CC	GG	GG	AA	CT	AA	CC	GG	CC	AA	GG
20._RUQ_222	__	__	__	__	GG	GG	AA	__	AA	CC	__	__	AA	__
21._GC-01-80-4-16	AA	GG	GG	GG	CC	CC	__	AG	AA	CC	CC	__	AA	__
22._RUQ_222	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA	__

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
1._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
2._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
3._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
4._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
5._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
6._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
7._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
8._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
9._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
10._GC-01-080-4-16	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
11._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
12._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
13._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
14._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
15._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
16._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
17._GU_147_/H	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
18._RUQ_222	__	AA	CC	GG	CC	AA	TT	TT	__	__	X_X	X_X	X_X	X_X
19._RUQ_222	GG	AA	CC	GG	CC	AA	TT	TT	AT	GG	X_X	X_X	X_X	X_X
20._RUQ_222	__	__	__	GG	__	__	__	__	__	__	X_X	X_X	X_X	X_X
21._GC-01-80-4-16	GG	AA	GG	GG	GG	AA	AA	AA	AT	GG	X_X	X_X	X_X	X_X
22._RUQ_222	GG	AA	GG	GG	GG	AA	AA	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: GU_147_/H

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Mars Center for Cocoa Science, Brazil

Location: 1416 1 > FP

Dapeng Zhang, 2016

1._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 5 > FP

Dapeng Zhang, 2016

2._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

3._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP4

4._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

5._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

6._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

7._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

9._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._GU_147_/H GC-01-080-4-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 2

Dapeng Zhang, 2016

12._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 7

Dapeng Zhang, 2016

13._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 12

Dapeng Zhang, 2016

14._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 13

Dapeng Zhang, 2016

15._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 16

Dapeng Zhang, 2016

16._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 14 > F

Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 15 > F

Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

21._GU_147_/H GC-01-80-4-16

45.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 16, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

22._GU_147_/H RUQ_222

42.4 %
33 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP32	38	TcSNP25