SNP Profiles of GU 147 /H View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
1._RUQ_222	__	GG	CC	CC	__	__	__	TT	__	__	__	__	CC	GG
2._RUQ_222	__	__	CC	__	__	__	__	TT	__	CC	__	GG	__	GG
3._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
4._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
5._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
6._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
7._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
8._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
9._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
10._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
11._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
12._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
13._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
14._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
15._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
16._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
17._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
18._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
19._GC-01-080-4-16	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
20._GU_147_/H	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
21._GC-01-80-4-16	GG	GG	GG	GG	AA	__	AA	AA	__	__	AA	GG	GG	GG
22._RUQ_222	GG	AG	CC	GG	AA	CC	AA	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	GG	GG	AA	CT	AA	CC	GG	CC	AA
1._RUQ_222	__	__	__	__	CC	GG	GG	__	CT	AA	CC	GG	CC	AA
2._RUQ_222	__	__	__	__	__	GG	GG	AA	__	AA	CC	__	__	AA
3._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
4._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
5._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
6._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
7._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
8._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
9._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
10._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
11._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
12._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
13._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
14._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
15._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
16._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
17._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
18._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
19._GC-01-080-4-16	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
20._GU_147_/H	CC	AA	GG	CC	CC	GG	GG	GG	CT	AA	CC	GG	CC	AA
21._GC-01-80-4-16	GG	AA	GG	GG	GG	CC	CC	__	AG	AA	CC	CC	__	AA
22._RUQ_222	AG	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
1._RUQ_222	GG	__	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X
2._RUQ_222	__	__	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X
3._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
4._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
5._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
6._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
7._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
8._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
9._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
10._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
11._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
12._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
13._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
14._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
15._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
16._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
17._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
18._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
19._GC-01-080-4-16	GG	GG	AA	CC	GG	CC	AA	TT	TT	__	AT	GG	X_X	X_X
20._GU_147_/H	GG	GG	AA	CC	GG	CC	AA	TT	TT	__	AT	GG	X_X	X_X
21._GC-01-80-4-16	__	GG	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X
22._RUQ_222	__	GG	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X

Input profile: GU_147_/H RUQ_222

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._GU_147_/H RUQ_222

identical
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._GU_147_/H RUQ_222

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

3._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 5 > FP

Dapeng Zhang, 2016

4._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

5._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP4

6._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

7._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

8._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

11._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 2

Dapeng Zhang, 2016

13._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 7

Dapeng Zhang, 2016

14._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 12

Dapeng Zhang, 2016

15._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 13

Dapeng Zhang, 2016

16._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 16

Dapeng Zhang, 2016

17._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 14 > F

Dapeng Zhang, 2016

18._GU_147_/H

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 15 > F

Dapeng Zhang, 2016

19._GU_147_/H GC-01-080-4-16

97.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

20._GU_147_/H

97.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 1 > FP

Dapeng Zhang, 2016

21._GU_147_/H GC-01-80-4-16

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 16, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

22._GU_147_/H RUQ_222

45.7 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25