SNP Profiles of GU 136 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCGGGGCCTTTTTTCCCCAAGGCCAACC
1._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
2._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
3._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
4._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
5._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
6._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
7._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
8._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
9._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
10._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
11._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
12._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
13._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
14._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
15._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
16._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
17._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
18._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
19._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
20._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
21._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
22._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
23._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
24._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
25._GU_136_/H
CCGGGGCCTTTT__CCCCAAGGCCAACC
26._GC-03-019-2-08
CCGGGGCCTTTT__CCCCAAGGCCAACC
27._GC-03-019-2-08
CCGGGGCCTTTTTTCCCCAAGGCCAACC
28._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
29._GU_136_/H
CCGGGGCCTTTTTTCCCCAAGGCCAACC
30._RUQ_221
__GGGGCC____TT________CCAA__
31._RUQ_221
CCGGGGCCTTTTTTCCCCAAGGCCAACC
32._RUQ_221
____GG______TT__CC__GG__AA__
33._GC-03-19-2-8
GGGGCCGGAAAAAA____AAGGGGAAGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
1._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
2._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
3._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
4._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
5._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
6._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
7._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
8._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
9._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
10._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
11._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
12._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
13._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
14._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
15._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
16._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
17._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
18._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
19._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
20._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
21._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
22._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
23._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
24._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
25._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
26._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
27._GC-03-019-2-08
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
28._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
29._GU_136_/H
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
30._RUQ_221
______CCGGGG__CCCCCCGGCCAAGG
31._RUQ_221
AAGGCCCCGGGGAACCCCCCGGCCAAGG
32._RUQ_221
________GGGGAA__CCCC____AA__
33._GC-03-19-2-8
AAGGGGGGCCCC__GGCCCCCC__AA__
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._GC-03-019-2-08
__AACCGGCCAATTTTAAATGGX_XX_XX_X
25._GU_136_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._GC-03-019-2-08
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
27._GC-03-019-2-08
GGAACCGGCCAATT__AAATGGX_XX_XX_X
28._GU_136_/H
__AACCGGCCAATTTTAAATGGX_XX_XX_X
29._GU_136_/H
GGAACCGGCCAATT__AAATGGX_XX_XX_X
30._RUQ_221
__AACCGGCCAATTTTAA____X_XX_XX_X
31._RUQ_221
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
32._RUQ_221
______GG________AA____X_XX_XX_X
33._GC-03-19-2-8
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_136_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

1._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

15._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

16._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

17._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

18._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

19._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

20._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

21._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

22._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

23._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

24._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

26._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

28._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

29._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

30._GU_136_/H RUQ_221

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._GU_136_/H RUQ_221

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._GU_136_/H RUQ_221

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

33._GU_136_/H GC-03-19-2-8

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25