SNP Profiles of GU 136 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGGGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_221
__GGGGCC______TT________CCAA
2._RUQ_221
____GG________TT__CC__GG__AA
3._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
4._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
5._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
6._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
7._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
8._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
9._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
10._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
11._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
12._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
13._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
14._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
15._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
16._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
17._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
18._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
19._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
20._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
21._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
22._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
23._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
24._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
25._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
26._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
27._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
28._GU_136_/H
CCGGGGCCTT__TT__CCCCAAGGCCAA
29._GC-03-019-2-08
CCGGGGCCTT__TT__CCCCAAGGCCAA
30._GC-03-019-2-08
CCGGGGCCTT__TTTTCCCCAAGGCCAA
31._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
32._GU_136_/H
CCGGGGCCTT__TTTTCCCCAAGGCCAA
33._GC-03-19-2-8
GGGGCCGGAAACAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCGGGGAACCCCCCGGCCAA
1._RUQ_221
________CCGGGG__CCCCCCGGCCAA
2._RUQ_221
__________GGGGAA__CCCC____AA
3._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
4._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
5._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
6._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
7._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
8._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
9._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
10._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
11._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
12._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
13._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
14._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
15._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
16._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
17._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
18._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
19._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
20._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
21._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
22._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
23._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
24._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
25._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
26._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
27._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
28._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
29._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
30._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
31._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
32._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
33._GC-03-19-2-8
GGAAGGGGGGCCCC__GGCCCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_221
GG__AACCGGCCAATTTTAA____X_XX_X
2._RUQ_221
________GG________AA____X_XX_X
3._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
24._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
25._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
26._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
27._GC-03-019-2-08
GG__AACCGGCCAATTTTAAATGGX_XX_X
28._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
29._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
30._GC-03-019-2-08
GGGGAACCGGCCAATT__AAATGGX_XX_X
31._GU_136_/H
GGGGAACCGGCCAATT__AAATGGX_XX_X
32._GU_136_/H
GG__AACCGGCCAATTTTAAATGGX_XX_X
33._GC-03-19-2-8
__GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_136_/H RUQ_221

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_136_/H RUQ_221

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_136_/H RUQ_221

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

3._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

16._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

18._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

19._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

20._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

21._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

22._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

23._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

24._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

25._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

26._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

27._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

28._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

29._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

31._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

32._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

33._GU_136_/H GC-03-19-2-8

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25