SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
1._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
2._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
6._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
7._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
8._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
9._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
10._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
11._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
12._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
13._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
14._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
15._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
16._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
17._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
18._GU_133_/C
CCGGCGCCTTTT__CCCCAAGGCCGGCC
19._GC-08-164-4-07
CCGGCGCCTTTT__CCCCAAGGCCGGCC
20._GC-01-116-6-13
CCGGCGCC__TT__CCCCAAGGCCGGCC
21._GU_133_/C
CCGGCGCC__TT__CCCCAAGGCCGGCC
22._RUQ_190
__GGCGCC____TT________CCGG__
23._RUQ_190
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
24._RUQ_190
____CG______TT__CC__GG__GG__
25._RUQ_190
____CG________________CC__CC
26._GC-01-116-6-13
GGGGCGGGAAAAAA____AAGGGGGGGG
27._MITC-000670
GGGGCGGGAAAAAA____AAGGGGGGGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCACCCGGAAGGGG
1._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
2._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
3._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGAAGGGG
4._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGAAGGGG
5._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGAAGGGG
6._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
7._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
8._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
9._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
10._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
11._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
12._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
13._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
14._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
15._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGAAGGGG
16._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
17._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
18._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGAAGGGG
19._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGAAGGGG
20._GC-01-116-6-13
AAGGCC__GGGGGGCCACCCGGAAGGGG
21._GU_133_/C
AAGGCC__GGGGGGCCACCCGGAAGGGG
22._RUQ_190
______CCGGGG__CCACCCGGAAGG__
23._RUQ_190
AAGGCCCCGGGGAACCACCCGGAAGGGG
24._RUQ_190
________GGGGAA__ACCC__AA____
25._RUQ_190
______CCCC______ACCC________
26._GC-01-116-6-13
AAGGGGGGCCCC__GGACCCCCAA__GG
27._MITC-000670
AAGGGGGGCCCC__GGACCCCCAA__GG
 29303132333435363738    
_Input profile
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
1._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
2._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
3._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
4._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
5._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
6._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
7._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
8._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
9._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
10._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
11._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
12._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
13._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
14._GU_133_/C
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
15._GC-01-116-6-13
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
16._GC-08-164-4-07
AACCGGCC__TTTTAAATGGX_XX_XX_XX_X
17._GU_133_/C
AACCGGCC__TTTTAAATGGX_XX_XX_XX_X
18._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
19._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
20._GC-01-116-6-13
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
21._GU_133_/C
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
22._RUQ_190
AACCGGCCAATTTTAA____X_XX_XX_XX_X
23._RUQ_190
AACCGGCCAATTGTAAATGGX_XX_XX_XX_X
24._RUQ_190
____GG________AA____X_XX_XX_XX_X
25._RUQ_190
AA__GGGGAATT__AA____X_XX_XX_XX_X
26._GC-01-116-6-13
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X
27._MITC-000670
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_133_/C

 
Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

1._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

10._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

11._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

12._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

13._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._GU_133_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

15._GU_133_/C GC-01-116-6-13

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._GU_133_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

18._GU_133_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

19._GU_133_/C GC-08-164-4-07

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

identical
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

21._GU_133_/C

identical
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25