SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
1._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
2._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
6._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
7._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
8._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
9._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
10._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
11._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
12._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
13._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
14._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
15._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
16._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
17._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
18._GU_133_/C
CCGGCGCCTTTT__CCCCAAGGCCGGCC
19._GC-08-164-4-07
CCGGCGCCTTTT__CCCCAAGGCCGGCC
20._GU_133_/C
CCGGCGCC__TT__CCCCAAGGCCGGCC
21._GC-01-116-6-13
CCGGCGCC__TT__CCCCAAGGCCGGCC
22._RUQ_190
__GGCGCC____TT________CCGG__
23._RUQ_190
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
24._RUQ_190
____CG______TT__CC__GG__GG__
25._RUQ_190
____CG________________CC__CC
26._GC-01-116-6-13
GGGGCGGGAAAAAA____AAGGGGGGGG
27._MITC-000670
GGGGCGGGAAAAAA____AAGGGGGGGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCACCCGGCCAAGG
1._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
2._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
3._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
4._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
5._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
6._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
7._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
8._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
9._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
10._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
11._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
12._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
13._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
14._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGG__AAGG
15._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
16._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
17._GU_133_/C
AAGGCCCCGGGGGGCCACCCGG__AAGG
18._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
19._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
20._GU_133_/C
AAGGCC__GGGGGGCCACCCGGCCAAGG
21._GC-01-116-6-13
AAGGCC__GGGGGGCCACCCGGCCAAGG
22._RUQ_190
______CCGGGG__CCACCCGGCCAAGG
23._RUQ_190
AAGGCCCCGGGGAACCACCCGGCCAAGG
24._RUQ_190
________GGGGAA__ACCC____AA__
25._RUQ_190
______CCCC______ACCC________
26._GC-01-116-6-13
AAGGGGGGCCCC__GGACCCCC__AA__
27._MITC-000670
AAGGGGGGCCCC__GGACCCCC__AA__
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GC-01-116-6-13
GGAACC__CCAATTTTAAATGGX_XX_XX_X
13._GC-08-164-4-07
GGAACCGGCC__TTTTAAATGGX_XX_XX_X
14._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_133_/C
GGAACC__CCAATTTTAAATGGX_XX_XX_X
16._GU_133_/C
GGAACCGGCC__TTTTAAATGGX_XX_XX_X
17._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_133_/C
GGAACC__CCAATTTTAAATGGX_XX_XX_X
21._GC-01-116-6-13
GGAACC__CCAATTTTAAATGGX_XX_XX_X
22._RUQ_190
__AACCGGCCAATTTTAA____X_XX_XX_X
23._RUQ_190
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
24._RUQ_190
______GG________AA____X_XX_XX_X
25._RUQ_190
__AA__GGGGAATT__AA____X_XX_XX_X
26._GC-01-116-6-13
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
27._MITC-000670
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_133_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._GU_133_/C GC-08-164-4-07

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

7._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

8._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

9._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

10._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

11._GU_133_/C GC-08-164-4-07

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_133_/C GC-01-116-6-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

16._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

17._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

19._GU_133_/C GC-08-164-4-07

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._GU_133_/C

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

21._GU_133_/C GC-01-116-6-13

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

22._GU_133_/C RUQ_190

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25