SNP Profiles of GU 133 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTCCTTTTCCCCAAGGCCGG
1._RUQ_190
____CG________TT__CC__GG__GG
2._RUQ_190
__GGCGCC______TT________CCGG
3._GC-08-164-4-07
CCGGCGCCTT__TTTTCCCCAAGGCCGG
4._GC-08-164-4-07
CCGGCGCCTT__TTTTCCCCAAGGCCGG
5._GC-01-116-6-13
CCGGCGCCTT__TTTTCCCCAAGGCCGG
6._GC-01-116-6-13
CCGGCGCCTT__TTTTCCCCAAGGCCGG
7._GC-01-116-6-13
CCGGCGCCTT__TTTTCCCCAAGGCCGG
8._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
9._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
10._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
11._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
12._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
13._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
14._GC-08-164-4-07
CCGGCGCCTT__TTTTCCCCAAGGCCGG
15._GC-01-116-6-13
CCGGCGCCTT__TTTTCCCCAAGGCCGG
16._GC-08-164-4-07
CCGGCGCCTT__TTTTCCCCAAGGCCGG
17._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
18._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
19._GU_133_/C
CCGGCGCCTT__TTTTCCCCAAGGCCGG
20._GU_133_/C
CCGGCGCCTT__TT__CCCCAAGGCCGG
21._GC-08-164-4-07
CCGGCGCCTT__TTTTCCCCAAGGCCGG
22._GC-08-164-4-07
CCGGCGCCTT__TT__CCCCAAGGCCGG
23._GU_133_/C
CCGGCGCC____TT__CCCCAAGGCCGG
24._GC-01-116-6-13
CCGGCGCC____TT__CCCCAAGGCCGG
25._RUQ_190
____CG__________________CC__
26._MITC-000670
GGGGCGGGAACCAAAA____AAGGGGGG
27._GC-01-116-6-13
GGGGCGGGAA__AAAA____AAGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCGGGGAACCACCCGGCCAA
1._RUQ_190
__________GGGGAA__ACCC____AA
2._RUQ_190
________CCGGGG__CCACCCGGCCAA
3._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
4._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
5._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
6._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
7._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
8._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
9._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
10._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
11._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
12._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
13._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
14._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
15._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
16._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
17._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
18._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
19._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGG__AA
20._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
21._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGG__AA
22._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
23._GU_133_/C
CCAAGGCC__GGGGGGCCACCCGGCCAA
24._GC-01-116-6-13
CCAAGGCC__GGGGGGCCACCCGGCCAA
25._RUQ_190
CC______CCCC______ACCC______
26._MITC-000670
GGAAGGGGGGCCCC__GGACCCCC__AA
27._GC-01-116-6-13
GGAAGGGGGGCCCC__GGACCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCGGCCAATTGTAAATGGX_XX_X
1._RUQ_190
________GG________AA____X_XX_X
2._RUQ_190
GG__AACCGGCCAATTTTAA____X_XX_X
3._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GC-01-116-6-13
GGGGAACC__CCAATTTTAAATGGX_XX_X
16._GC-08-164-4-07
GGGGAACCGGCC__TTTTAAATGGX_XX_X
17._GU_133_/C
GGGGAACC__CCAATTTTAAATGGX_XX_X
18._GU_133_/C
GGGGAACCGGCC__TTTTAAATGGX_XX_X
19._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_133_/C
GGGGAACC__CCAATTTTAAATGGX_XX_X
24._GC-01-116-6-13
GGGGAACC__CCAATTTTAAATGGX_XX_X
25._RUQ_190
____AA__GGGGAATT__AA____X_XX_X
26._MITC-000670
__GGAAGGGGGGAAAAAAAAATGGX_XX_X
27._GC-01-116-6-13
__GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_133_/C RUQ_190

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_133_/C RUQ_190

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

2._GU_133_/C RUQ_190

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

9._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

10._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

11._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

12._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

13._GU_133_/C

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

14._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._GU_133_/C GC-01-116-6-13

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._GU_133_/C

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

18._GU_133_/C

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

19._GU_133_/C

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

20._GU_133_/C

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

21._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._GU_133_/C

95.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

24._GU_133_/C GC-01-116-6-13

95.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C MITC-000670

51.4 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

27._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25