SNP Profiles of GU 125/C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
1._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
2._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
3._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
4._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
5._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
6._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
7._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
8._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
9._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
10._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
11._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
12._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	GG	CC	GG	CC	AA
13._RUQ_188	_	GG	CG	CC	_	_	TT	_	_	_	CC	AG	_	_
14._RUQ_188	CC	GG	CG	CC	TT	TT	TT	CC	CC	GG	CC	AG	CC	AA
15._RUQ_188	CC	GG	CG	CC	TT	TT	TT	CC	CC	GG	CC	AG	CC	AA
16._GC-01-138-7-17	GG	GG	GG	GG	AA	AA	AA	_	_	GG	GG	GG	GG	AA
17._RUQ_188	GG	GG	CG	GG	AA	AA	AA	_	_	GG	GG	AG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
1._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
2._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	_	CC	AA	GG	GG
3._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
4._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
5._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
6._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
7._GC-01-138-7-17	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
8._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
9._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	_	CC	AA	GG	GG
10._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
11._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
12._GU_125_/C	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG	GG
13._RUQ_188	_	_	CC	GG	GG	_	CC	AC	CC	GG	CC	AA	GG	_
14._RUQ_188	GG	CC	CC	GG	GG	AG	CC	AC	CC	GG	CC	AA	GG	GG
15._RUQ_188	GG	CC	CC	GG	GG	AG	CC	AC	CC	GG	CC	AA	GG	GG
16._GC-01-138-7-17	GG	GG	GG	CC	CC	_	GG	CC	CC	CC	_	AA	_	GG
17._RUQ_188	GG	GG	GG	CC	CC	_	GG	AC	CC	CC	_	AA	_	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
1._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
2._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
3._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
4._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
5._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
6._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
7._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
8._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
9._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
10._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
11._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
12._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
13._RUQ_188	AA	CC	GG	CC	AA	TT	TT	AA	_	_	X_X	X_X	X_X	X_X
14._RUQ_188	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
15._RUQ_188	AA	CC	GG	CC	AA	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
16._GC-01-138-7-17	AA	GG	GG	GG	AA	AA	AA	AA	AA	GG	X_X	X_X	X_X	X_X
17._RUQ_188	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: GU_125_/C

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Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

1._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

2._GU_125_/C GC-01-138-7-17

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

3._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

4._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

6._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._GU_125_/C

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

10._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

11._GU_125_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

12._GU_125_/C

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._GU_125_/C GC-01-138-7-17

45.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

17._GU_125_/C RUQ_188

42.4 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25