SNP Profiles of GU 125 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_125_/C
CCGGCCCCTTTTTTCCCC__GGCCGGCC
11._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GC-01-138-7-17
CCGGCCCCTTTTTTCCCC__GGCCGGCC
13._RUQ_188
__GGCGCC____TT________CCAG__
14._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
15._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
16._RUQ_188
____CG______TT__CC__GG__AG__
17._GC-01-138-7-17
GGGGGGGGAAAAAA____AAGGGGGGGG
18._RUQ_188
GGGGCGGGAAAAAA____AAGGGGAGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAACCCCCCGGCCAAGG
1._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
2._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
3._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
4._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
5._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
6._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
7._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
8._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
9._GU_125_/C
AAGGCCCCGGGGAACCCCCC__CCAAGG
10._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
11._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCC__CCAAGG
12._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
13._RUQ_188
______CCGGGG__CCACCCGGCCAAGG
14._RUQ_188
AAGGCCCCGGGGAGCCACCCGGCCAAGG
15._RUQ_188
AAGGCCCCGGGGAGCCACCCGGCCAAGG
16._RUQ_188
________GGGGAG__ACCC____AA__
17._GC-01-138-7-17
AAGGGGGGCCCC__GGCCCCCC__AA__
18._RUQ_188
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
5._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._RUQ_188
__AACCGGCCAATTTTAA____X_XX_XX_X
14._RUQ_188
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._RUQ_188
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
16._RUQ_188
______GG________AA____X_XX_XX_X
17._GC-01-138-7-17
GGAAGGGGGGAAAAAAAAAAGGX_XX_XX_X
18._RUQ_188
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_125_/C

 
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

1._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

2._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

3._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

4._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016

5._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

10._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

11._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._GU_125_/C RUQ_188

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.6 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_125_/C GC-01-138-7-17

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_125_/C RUQ_188

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25