SNP Profiles of GU 125 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
1._RUQ_188	__	GG	CG	CC	__	__	__	TT	__	__	__	__	CC	AG
2._RUQ_188	__	__	CG	__	__	__	__	TT	__	CC	__	GG	__	AG
3._RUQ_188	CC	GG	CG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
4._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
5._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
6._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
7._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
8._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
9._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
10._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
11._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
12._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
13._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
14._GU_125_/C	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	__	GG	CC	GG
15._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	GG
16._GC-01-138-7-17	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	__	GG	CC	GG
17._RUQ_188	GG	GG	CG	GG	AA	CC	AA	AA	__	__	AA	GG	GG	AG
18._GC-01-138-7-17	GG	GG	GG	GG	AA	__	AA	AA	__	__	AA	GG	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	GG	GG	AG	CC	AC	CC	GG	CC	AA
1._RUQ_188	__	__	__	__	CC	GG	GG	__	CC	AC	CC	GG	CC	AA
2._RUQ_188	__	__	__	__	__	GG	GG	AG	__	AC	CC	__	__	AA
3._RUQ_188	CC	AA	GG	CC	CC	GG	GG	AG	CC	AC	CC	GG	CC	AA
4._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
5._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
6._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
7._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
8._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
9._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
10._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
11._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
12._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
13._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	__	CC	AA
14._GU_125_/C	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
15._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	__	CC	AA
16._GC-01-138-7-17	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
17._RUQ_188	GG	AA	GG	GG	GG	CC	CC	__	GG	AC	CC	CC	__	AA
18._GC-01-138-7-17	GG	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X
1._RUQ_188	GG	__	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X
2._RUQ_188	__	__	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X
3._RUQ_188	GG	GG	AA	CC	GG	CC	AA	TT	GT	AA	AT	GG	X_X	X_X
4._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
5._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
6._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
7._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
8._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
9._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
10._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
11._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
12._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
13._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
14._GU_125_/C	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
15._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
16._GC-01-138-7-17	GG	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X
17._RUQ_188	__	GG	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X
18._GC-01-138-7-17	__	GG	AA	GG	GG	GG	AA	AA	AA	AA	AA	GG	X_X	X_X

Input profile: GU_125_/C RUQ_188

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._GU_125_/C RUQ_188

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._GU_125_/C RUQ_188

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

3._GU_125_/C RUQ_188

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._GU_125_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

5._GU_125_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

6._GU_125_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

7._GU_125_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

8._GU_125_/C GC-01-138-7-17

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

9._GU_125_/C GC-01-138-7-17

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._GU_125_/C GC-01-138-7-17

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._GU_125_/C GC-01-138-7-17

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

12._GU_125_/C

93.6 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

13._GU_125_/C

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

14._GU_125_/C

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

15._GU_125_/C GC-01-138-7-17

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

16._GU_125_/C GC-01-138-7-17

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._GU_125_/C RUQ_188

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

18._GU_125_/C GC-01-138-7-17

44.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25