SNP Profiles of GU 114 /P View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
1._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
2._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
3._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
4._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
5._GU_114_/P	CC	GG	__	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
6._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	__	CC	CC	AA
7._RUQ_813	__	GG	CC	CC	__	__	TT	__	__	__	__	CC	__	__
8._RUQ_813	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
9._GU_114_/P	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	CC	AA
10._RUQ_813	__	__	CC	__	__	__	TT	__	CC	__	GG	__	__	__
11._RUQ_813	__	__	GG	__	__	__	__	__	__	__	__	CC	CC	__
12._RUQ_813	GG	GG	GG	GG	AA	AA	AA	__	__	AA	GG	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
1._GU_114_/P	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
2._GU_114_/P	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
3._GU_114_/P	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
4._GU_114_/P	__	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
5._GU_114_/P	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
6._GU_114_/P	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG	GG
7._RUQ_813	__	__	CC	GG	GG	__	CT	CC	CC	GG	CC	AA	AG	__
8._RUQ_813	GG	CC	CC	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
9._GU_114_/P	GG	CC	CC	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
10._RUQ_813	__	__	__	GG	GG	AA	__	CC	CC	__	__	AA	__	__
11._RUQ_813	__	__	CC	CC	__	__	__	CC	CC	__	__	__	__	__
12._RUQ_813	GG	GG	GG	CC	CC	__	AG	CC	CC	CC	__	AA	__	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
1._GU_114_/P	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
2._GU_114_/P	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
3._GU_114_/P	AA	CC	GG	CC	AA	__	TT	AA	AA	GG	X_X	X_X	X_X	X_X
4._GU_114_/P	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
5._GU_114_/P	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
6._GU_114_/P	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
7._RUQ_813	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X	X_X	X_X
8._RUQ_813	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
9._GU_114_/P	AA	CC	GG	__	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
10._RUQ_813	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X	X_X	X_X
11._RUQ_813	AA	__	GG	GG	AA	TT	__	AA	__	__	X_X	X_X	X_X	X_X
12._RUQ_813	AA	GG	GG	GG	AA	AA	AA	AA	AA	GG	X_X	X_X	X_X	X_X

Input profile: GU_114_/P

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Mars Center for Cocoa Science, Brazil

Location: 8413 5

Dapeng Zhang, 2016

1._GU_114_/P

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 1

Dapeng Zhang, 2016

2._GU_114_/P

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 7

Dapeng Zhang, 2016

3._GU_114_/P

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 2

Dapeng Zhang, 2016

4._GU_114_/P

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 3

Dapeng Zhang, 2016

5._GU_114_/P

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 12

Dapeng Zhang, 2016

6._GU_114_/P

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 9

Dapeng Zhang, 2016

7._GU_114_/P RUQ_813

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._GU_114_/P RUQ_813

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._GU_114_/P

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X3 Y18

Dapeng Zhang, 2016

10._GU_114_/P RUQ_813

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

11._GU_114_/P RUQ_813

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

45.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25