SNP Profiles of GU 114 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
1._GU_114_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
2._GU_114_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
3._GU_114_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
4._GU_114_/P
CCGGCCCCTTTTTTCCCCAAGGCC__CC
5._GU_114_/P
CCGG__CCTTTTTTCCCCAAGGCCAGCC
6._GU_114_/P
CCGGCCCCTTTTTTCCCCAA__CCAGCC
7._RUQ_813
__GGCCCC____TT________CCAG__
8._RUQ_813
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
9._GU_114_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
10._RUQ_813
____CC______TT__CC__GG__AG__
11._RUQ_813
____GG________________CC__CC
12._RUQ_813
GGGGGGGGAAAAAA____AAGGGGAGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
1._GU_114_/P
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
2._GU_114_/P
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
3._GU_114_/P
AA__CCCCGGGGAGCTCCCCGGCCAAAG
4._GU_114_/P
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
5._GU_114_/P
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
6._GU_114_/P
AAGGCCCCGGGGAGCTCCCCGGCCAAAG
7._RUQ_813
______CCGGGG__CTCCCCGGCCAAAG
8._RUQ_813
AAGGCCCCGGGGAACTCCCCGGCCAAAG
9._GU_114_/P
AAGGCCCCGGGGAACTCCCCGGCCAAAG
10._RUQ_813
________GGGGAA__CCCC____AA__
11._RUQ_813
______CCCC______CCCC________
12._RUQ_813
AAGGGGGGCCCC__AGCCCCCC__AA__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
1._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
2._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
3._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
4._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
5._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
6._GU_114_/P
GGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
7._RUQ_813
__AACCGGCCAATTAA____X_XX_XX_XX_X
8._RUQ_813
AGAACCGGCCAATTAAAAGGX_XX_XX_XX_X
9._GU_114_/P
AGAACCGG__AATTAAAAGGX_XX_XX_XX_X
10._RUQ_813
______GG______AA____X_XX_XX_XX_X
11._RUQ_813
__AA__GGGGAA__AA____X_XX_XX_XX_X
12._RUQ_813
GGAAGGGGGGAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_114_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

1._GU_114_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

2._GU_114_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

3._GU_114_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

4._GU_114_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

5._GU_114_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

6._GU_114_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

7._GU_114_/P RUQ_813

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._GU_114_/P RUQ_813

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._GU_114_/P

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

10._GU_114_/P RUQ_813

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._GU_114_/P RUQ_813

75 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

48.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25