SNP Profiles of GU 114/P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTCCTTTTCCCCAAGGCCAG
1._GU_114_/P___
CCGGCCCCTTCCTTTTCCCCAAGGCCAG
2._GU_114_/P___
__GGCCCC______TT________CCAG
3._GU_114_/P___
____CC________TT__CC__GG__AG
4._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCAG
5._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCAG
6._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCAG
7._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAAGGCCAG
8._GU_114_/P___
CCGG__CCTT__TTTTCCCCAAGGCCAG
9._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAA__CCAG
10._GU_114_/P___
CCGGCCCCTT__TTTTCCCCAAGGCC__
11._GU_114_/P___
____GG__________________CC__
12._GU_114_/P___
GGGGGGGGAACCAAAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCGGGGAACTCCCCGGCCAA
1._GU_114_/P___
CCAAGGCCCCGGGGAACTCCCCGGCCAA
2._GU_114_/P___
________CCGGGG__CTCCCCGGCCAA
3._GU_114_/P___
__________GGGGAA__CCCC____AA
4._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
5._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
6._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
7._GU_114_/P___
CCAA__CCCCGGGGAGCTCCCCGGCCAA
8._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
9._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
10._GU_114_/P___
CCAAGGCCCCGGGGAGCTCCCCGGCCAA
11._GU_114_/P___
CC______CCCC______CCCC______
12._GU_114_/P___
GGAAGGGGGGCCCC__AGCCCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGAGAACCGGAATTTTAAAAGGX_XX_XX_X
1._GU_114_/P___
AGAGAACCGGAATTTTAAAAGGX_XX_XX_X
2._GU_114_/P___
AG__AACCGGAATTTTAA____X_XX_XX_X
3._GU_114_/P___
________GG______AA____X_XX_XX_X
4._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
5._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
6._GU_114_/P___
AGGGAACCGGAA__TTAAAAGGX_XX_XX_X
7._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
8._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
9._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
10._GU_114_/P___
AGGGAACCGGAATTTTAAAAGGX_XX_XX_X
11._GU_114_/P___
____AA__GGAATT__AA____X_XX_XX_X
12._GU_114_/P___
__GGAAGGGGAAAAAAAAAAGGX_XX_XX_X

Input profile: GU_114_/P

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

1._GU_114_/P RUQ_813

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._GU_114_/P RUQ_813

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_114_/P RUQ_813

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_114_/P

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

5._GU_114_/P

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

6._GU_114_/P

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

7._GU_114_/P

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

8._GU_114_/P

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

9._GU_114_/P

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

10._GU_114_/P

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

11._GU_114_/P RUQ_813

83.3 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25