SNP Profiles of GU 114 /P View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
1._RUQ_813	CC	GG	CC	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
2._RUQ_813	__	GG	CC	CC	__	__	__	TT	__	__	__	__	CC	AG
3._RUQ_813	__	__	CC	__	__	__	__	TT	__	CC	__	GG	__	AG
4._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	AG
5._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	AG
6._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	AG
7._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	AG
8._GU_114_/P	CC	GG	__	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	AG
9._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	__	CC	AG
10._GU_114_/P	CC	GG	CC	CC	TT	__	TT	TT	CC	CC	AA	GG	CC	__
11._RUQ_813	__	__	GG	__	__	__	__	__	__	__	__	__	CC	__
12._RUQ_813	GG	GG	GG	GG	AA	CC	AA	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	GG	GG	AA	CT	CC	CC	GG	CC	AA
1._RUQ_813	CC	AA	GG	CC	CC	GG	GG	AA	CT	CC	CC	GG	CC	AA
2._RUQ_813	__	__	__	__	CC	GG	GG	__	CT	CC	CC	GG	CC	AA
3._RUQ_813	__	__	__	__	__	GG	GG	AA	__	CC	CC	__	__	AA
4._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
5._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
6._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
7._GU_114_/P	CC	AA	__	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
8._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
9._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
10._GU_114_/P	CC	AA	GG	CC	CC	GG	GG	AG	CT	CC	CC	GG	CC	AA
11._RUQ_813	CC	__	__	__	CC	CC	__	__	__	CC	CC	__	__	__
12._RUQ_813	GG	AA	GG	GG	GG	CC	CC	__	AG	CC	CC	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
1._RUQ_813	AG	AG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
2._RUQ_813	AG	__	AA	CC	GG	AA	TT	TT	AA	__	__	X_X	X_X	X_X
3._RUQ_813	__	__	__	__	GG	__	__	__	AA	__	__	X_X	X_X	X_X
4._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
5._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
6._GU_114_/P	AG	GG	AA	CC	GG	AA	__	TT	AA	AA	GG	X_X	X_X	X_X
7._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
8._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
9._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
10._GU_114_/P	AG	GG	AA	CC	GG	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
11._RUQ_813	__	__	AA	__	GG	AA	TT	__	AA	__	__	X_X	X_X	X_X
12._RUQ_813	__	GG	AA	GG	GG	AA	AA	AA	AA	AA	GG	X_X	X_X	X_X

Input profile: GU_114_/P

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X3 Y18

Dapeng Zhang, 2016

1._GU_114_/P RUQ_813

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._GU_114_/P RUQ_813

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._GU_114_/P RUQ_813

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

4._GU_114_/P

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 1

Dapeng Zhang, 2016

5._GU_114_/P

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 7

Dapeng Zhang, 2016

6._GU_114_/P

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 2

Dapeng Zhang, 2016

7._GU_114_/P

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 3

Dapeng Zhang, 2016

8._GU_114_/P

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 12

Dapeng Zhang, 2016

9._GU_114_/P

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 9

Dapeng Zhang, 2016

10._GU_114_/P

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8413 5

Dapeng Zhang, 2016

11._GU_114_/P RUQ_813

83.3 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25