SNP Profiles of EQX-0 (> EQX-O)   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTTTACCTTTCTCCAAAGCCAA
1._EQX_/O_[CHA]___
__AG__TT______TT________CCAA
2._EQX_/O_[CHA]___
CCGGGGCCTTACCCTTCCCCAAAGCC__
3._EQX_/O_[CHA]___
CCGGGGCCTTACCCTTCCCCAAAGCC__
4._EQX_/O_[CHA]___
CTAGGGCCTTACCCTTCCCTAAAACCAG
5._EQX_/O_[CHA]___
CTAGGGCCTTACCCTTCCCTAAAACCAG
6._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
7._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
8._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
9._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
10._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
11._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
12._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
13._EQX_/O_[CHA]___
TTAAGGCTTTAACCTTCCTTAAAACTAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCTCGGTAACTACGGGTCTAC
1._EQX_/O_[CHA]___
________CTCGGT__CTACCGGTCTAC
2._EQX_/O_[CHA]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
3._EQX_/O_[CHA]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
4._EQX_/O_[CHA]___
CTAAGGCTCCGGGGAGTTACCCTTCTAC
5._EQX_/O_[CHA]___
CTAAGGCTCCGGGGAGTTACCCTTCTAC
6._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
7._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
8._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
9._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
10._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
11._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
12._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
13._EQX_/O_[CHA]___
TTAAGGTTCCCCGTGGTTACCGTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAGATCCAACGCCTTGGACAAGGX_XX_X
1._EQX_/O_[CHA]___
AG__ATCCAACGCCTTGGAC____X_XX_X
2._EQX_/O_[CHA]___
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
3._EQX_/O_[CHA]___
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
4._EQX_/O_[CHA]___
AAGGAACCAGCCAACCGTACATGGX_XX_X
5._EQX_/O_[CHA]___
AAGGAACCAGCCAACCGTACATGGX_XX_X
6._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
7._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
8._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
9._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
10._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
11._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
12._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X
13._EQX_/O_[CHA]___
AGGGAACCGGCCAACCGTACTTGGX_XX_X

Input profile: EQX_/O_[CHA] RUQ_138

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._EQX_/O_[CHA] RUQ_138

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EQX_/O_[CHA]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

3._EQX_/O_[CHA] GC-07-077-4-21

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EQX_/O_[CHA]

61.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 1 > FP
 Dapeng Zhang, 2016

5._EQX_/O_[CHA] GC-07-087-5-22

61.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EQX_/O_[CHA]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 4 > FP
 Dapeng Zhang, 2016

7._EQX_/O_[CHA]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 2 > FP
 Dapeng Zhang, 2016

8._EQX_/O_[CHA]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 3
 Dapeng Zhang, 2016

9._EQX_/O_[CHA]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 1
 Dapeng Zhang, 2016

10._EQX_/O_[CHA] GC-07-077-4-21

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EQX_/O_[CHA] GC-07-077-4-21

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._EQX_/O_[CHA] GC-07-087-5-22

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._EQX_/O_[CHA] GC-07-087-5-22

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25