SNP Profiles of EET 58 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._RUQ_383
____CG________GT__CT__AG__AG
19._EET_58_[ECU]
CTAGCGCTCTACCTGTCTCTATAGCCAG
20._RUQ_383
CTAGCGCTCTACCTGTCTCTATAGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGGAGTTCCCGGGCTAC
1._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
2._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
3._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
4._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
5._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
6._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
7._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
8._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
9._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
10._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
11._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
12._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
13._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
14._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
15._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
16._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
17._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
18._RUQ_383
__________GGGGAG__CCCG____AC
19._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGTCTAC
20._RUQ_383
TTATGGCTCTGGGGAGCTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
1._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
2._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
3._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
4._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
5._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
6._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
7._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
8._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
9._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
10._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
11._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
12._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
13._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
14._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
15._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
16._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
17._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
18._RUQ_383
________AA________CC____X_XX_X
19._EET_58_[ECU]
AGAGATCCAACGCCCTGTCCATCGX_XX_X
20._RUQ_383
AGGGATCCAACGCCCTGTCCATCGX_XX_X

Input profile: EET_58_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

1._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

2._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016

12._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

13._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

14._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

15._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

16._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

17._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

18._EET_58_[ECU] RUQ_383

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._EET_58_[ECU]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

20._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25