SNP Profiles of EET 45 [ECU]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
1._GC-03-017-2-06
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
2._EET_45_[ECU]
CTAGCGCTCTACCTGTCTCTATAGCTAG
3._GC-03-017-2-06
CTAGCGCTCTACCTGTCTCTATAGCTAG
4._EET_45_[ECU]
CCAACGCTCTCCCTGGTT__AAAGCCAA
5._GC-04-057-4-08
__AACGCCCTACCTGGTTCTAAAGCCAA
6._EET_45_[ECU]
__AACGCCCTACCTGGTTCTAAAGCCAA
7._EET_45_[ECU]
CCAACGCTCTCCCTGGTT__AAAGCCAA
8._GC-04-058-4-09
CCAACGCCCTACCTGGTTCTAAAGCCAA
9._GC-04-058-4-09
CCAACGCCCTACCTGGTTCTAAAGCCAA
10._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
11._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
12._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
13._GC-03-017-2-06
CCAACGCCCTACCTGGTTCTAAAGCCAA
14._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
15._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
16._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
17._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
18._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
19._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
20._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
21._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
22._GC-04-058-4-09
CTAGCGCTTTAACCGGTTCTAAAACTAA
23._EET_45_[ECU]
CTAGCGCTTTAACCGGTTCTAAAACTAA
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGAGTTACCGGTCTAC
1._GC-03-017-2-06
CTATCGCTCTCGGGAGTTACCGGTCTAC
2._EET_45_[ECU]
CTATCGCTCTCGGGAGTTACGGGTCTAC
3._GC-03-017-2-06
CTATCGCTCTCGGGAGTTACGGGTCTAC
4._EET_45_[ECU]
CTTTCGCTCTCGGTAGTTAACGGGCTAA
5._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
6._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
7._EET_45_[ECU]
CTTTCGCTCTCGGTAGTTCCCGGGCTAA
8._GC-04-058-4-09
CTTTCGCTCTCGGTAATTCCCGGGCTAA
9._GC-04-058-4-09
CTTTCGCTCTCGGTAATTCCCGGGCTAA
10._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
11._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
12._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
13._GC-03-017-2-06
CTTTCGCTCTCGGTAATTCCCGGGCTAA
14._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
15._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
16._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
17._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
18._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
19._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
20._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
21._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
22._GC-04-058-4-09
CTAAGGTTCCCGTTGGCTACCGGTCTCC
23._EET_45_[ECU]
CTAAGGTTCCCGTTGGCTACCGGTCTCC
 293031323334353637383940  
_Input profile
AGAGAACCAACCACCTGTCCATCGX_XX_X
1._GC-03-017-2-06
AGAGAACCAACCACCTGTCCATCGX_XX_X
2._EET_45_[ECU]
AGAGAACCAACCAC__GTACATCGX_XX_X
3._GC-03-017-2-06
AGAGAACCAACCAC__GTACATCGX_XX_X
4._EET_45_[ECU]
GG__AACCAGCCCCCTGTCCAACGX_XX_X
5._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
6._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
7._EET_45_[ECU]
GG__AACCAG__CC__GTCCAACGX_XX_X
8._GC-04-058-4-09
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
9._GC-04-058-4-09
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
10._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
11._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
12._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
13._GC-03-017-2-06
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
14._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
15._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
16._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
17._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
18._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
19._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
20._GC-04-057-4-08
GGAAAACCAGCCCC__GTCCAACGX_XX_X
21._EET_45_[ECU]
GGAAAACCAGCCCC__GTCCAACGX_XX_X
22._GC-04-058-4-09
AGGGATCTGGCGACCTGGACATGGX_XX_X
23._EET_45_[ECU]
AGGGATCTGGCGACCTGGACATGGX_XX_X

Input profile: EET_45_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

1._EET_45_[ECU] GC-03-017-2-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

2._EET_45_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

3._EET_45_[ECU] GC-03-017-2-06

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._EET_45_[ECU]

80.3 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

5._EET_45_[ECU] GC-04-057-4-08

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._EET_45_[ECU]

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

7._EET_45_[ECU]

79.2 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._EET_45_[ECU] GC-04-058-4-09

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._EET_45_[ECU] GC-04-058-4-09

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._EET_45_[ECU] GC-04-057-4-08

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._EET_45_[ECU] GC-04-057-4-08

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._EET_45_[ECU] GC-04-057-4-08

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._EET_45_[ECU] GC-03-017-2-06

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

16._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

17._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

18._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

19._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

20._EET_45_[ECU] GC-04-057-4-08

78.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._EET_45_[ECU]

78.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

22._EET_45_[ECU] GC-04-058-4-09

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._EET_45_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25