SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
1._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
2._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
3._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
4._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
5._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
6._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
7._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
8._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
9._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
10._EET_400_[ECU]
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
11._RUQ_760
CCAGCCTTCTTTGTCTCCAAGGCCAGTT
12._EET_400_[ECU]
CCAGCCTTCTTTGTCTCCAAGGCCAATT
13._GC-01-066-4-02
CCAGCCTTCTTTGTCTCCAAGGCCAATT
14._GC-01-066-4-02
CCAGCCTTCTTTGTCTCCAAGGCCAATT
15._GC-01-066-4-02
CCAGCCTTCTTTGTCTCCAAGGCCAATT
16._EET_400_[ECU]
CCAGCCTTCTTTGTCTCCAAGGCCAATT
17._EET_400_[ECU]
CCAGCCTTCTTTGTCTCCAAGGCCAATT
18._EET_400_[ECU]
CCAGCCTTCTTTGTCTCCAAGGCCAATT
19._EET_400_[ECU]
__AGCCTT__TTGTCT____GGCCAATT
20._RUQ_760
__AGCCTT____GT________CCAA__
21._EET_400_[ECU]_Fld#_153_Plt#_2
GGAACGAGAGAAAC____AAGGGGAAAG
22._MITC-000396
GGAACGAGAGAGAC____AAGGGGAAAA
 1516171819202122232425262728
_Input profile
AAGGTTTTCGGGAACCAAGGTTCCCCAA
1._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
2._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
3._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
4._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
5._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
6._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
7._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
8._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
9._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
10._EET_400_[ECU]
AACGTTCCGGGGAATTCCGGTTCCACAA
11._RUQ_760
AACGCTCTCGGGAACTACGGGGCTACAG
12._EET_400_[ECU]
AACGCTCTCGGGAACTACGGGGCTACAG
13._GC-01-066-4-02
AACGCTCTCGGGAACTACGGGGCTACAG
14._GC-01-066-4-02
AACGCTCTCGGGAACTACGGGGCTACAG
15._GC-01-066-4-02
AACGCTCTCGGGAACTACGGGGCTACAG
16._EET_400_[ECU]
AACGCTCTCGGGAACTACGGGGCTACAG
17._EET_400_[ECU]
AACGCTCTCGGGAACTACGGGGCTACAG
18._EET_400_[ECU]
AACGCTCTCGGGAACTACGGGGCTACAG
19._EET_400_[ECU]
AACGCTCTCGGGAACTACGGGGCTACAG
20._RUQ_760
______TTCGGG__CTACCGGGCTACAG
21._EET_400_[ECU]_Fld#_153_Plt#_2
ATGGAGAGGGAC__AGACCGCC__AC__
22._MITC-000396
ATCCGGAGCCCC__AAACCGCC__AC__
 29303132333435363738    
_Input profile
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
1._GC-01-066-4-02
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
2._GC-01-066-4-02
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
3._GC-01-066-4-02
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
4._GC-01-066-4-02
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
5._GC-01-066-4-02
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
6._EET_400_[ECU]
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
7._EET_400_[ECU]
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
8._EET_400_[ECU]
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
9._EET_400_[ECU]
GGAACCGGCCAAGGAATTGGX_XX_XX_XX_X
10._EET_400_[ECU]
GGAACCAACCACGGACATGGX_XX_XX_XX_X
11._RUQ_760
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
12._EET_400_[ECU]
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
13._GC-01-066-4-02
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
14._GC-01-066-4-02
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
15._GC-01-066-4-02
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
16._EET_400_[ECU]
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
17._EET_400_[ECU]
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
18._EET_400_[ECU]
GGAACTAGCCCCGTACATGGX_XX_XX_XX_X
19._EET_400_[ECU]
GGAACCAG__CCGTACATGGX_XX_XX_XX_X
20._RUQ_760
__AACTAGCCCCGTAC____X_XX_XX_XX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
AGAAAGAGGGCCACACAACGX_XX_XX_XX_X
22._MITC-000396
AGAAAGAGGGCCAACCATCGX_XX_XX_XX_X

Input profile: EET_400_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

1._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

8._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

9._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

10._EET_400_[ECU]

75 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] RUQ_760

68.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

67.1 %
38 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

65.2 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

56.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

30.3 %
33 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

27.3 %
33 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25