SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCCTTCTAATTGTCTCCAAGGCCAA
1._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._EET_400_[ECU]
CCAGCCTTCTACTTGTCTCCAAGGCCAA
7._RUQ_760
CCAGCCTTCTACTTGTCTCCAAGGCCAG
8._EET_400_[ECU]
__AGCCTT__ACTTGTCT____GGCCAA
9._RUQ_760
__AGCCTT______GT________CCAA
10._EET_400_[ECU]
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
11._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
12._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
13._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
14._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
15._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
16._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
17._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
18._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
19._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
20._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
21._MITC-000396
GGAACGAGAGAAAGAC____AAGGGGAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
GGAACGAGAGCCAAAC____AAGGGGAA
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
2._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
3._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
4._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
5._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
6._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
7._RUQ_760
TTAACGCTCTCGGGAACTACGGGGCTAC
8._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
9._RUQ_760
________TTCGGG__CTACCGGGCTAC
10._EET_400_[ECU]
CTAACGTTCCGGGGAATTCCGGTTCCAC
11._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
12._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
13._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
14._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
15._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
16._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
17._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
18._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._MITC-000396
AAATCCGGAGCCCC__AAACCGCC__AC
22._EET_400_[ECU]_Fld#_153_Plt#_2
AGATGGAGAGGGAC__AGACCGCC__AC
 293031323334353637383940  
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._RUQ_760
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._EET_400_[ECU]
AGGGAACCAG__CCCTGTACATGGX_XX_X
9._RUQ_760
AG__AACTAGCCCCCTGTAC____X_XX_X
10._EET_400_[ECU]
AAGGAACCAACCACCTGGACATGGX_XX_X
11._GC-01-066-4-02
AAGGAACCGGCCAACTGGAATTGGX_XX_X
12._EET_400_[ECU]
AAGGAACCGGCCAACTGGAATTGGX_XX_X
13._GC-01-066-4-02
AAGGAACCGGCCAA__GGAATTGGX_XX_X
14._EET_400_[ECU]
AAGGAACCGGCCAA__GGAATTGGX_XX_X
15._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
16._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
17._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
18._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
21._MITC-000396
__AGAAAGAGGGCCAAAACCATCGX_XX_X
22._EET_400_[ECU]_Fld#_153_Plt#_2
__AGAAAGAGGGCCAAACACAACGX_XX_X

Input profile: EET_400_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU]

70 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

41.4 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

38.6 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25