SNP Profiles of EET 400 [ECU]   View Data

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 Key

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_Input profile
AGCCTTACTTGTCTGGCCAATTAACGCT
1._EET_400_[ECU]
AGCCTTACTTGTCTGGCCAATTAACGCT
2._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
3._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
4._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
5._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
6._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
7._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
8._RUQ_760
AGCCTTACTTGTCTGGCCAGTTAACGCT
9._RUQ_760
AGCCTT____GT____CCAA________
10._EET_400_[ECU]
AGGGCCCCTTTTCCGGCCAGCTAACGTT
11._GC-01-066-4-02
AAGGTT__TTTTCCGGCCGGTTAAGGTT
12._EET_400_[ECU]
AAGGTT__TTTTCCGGCCGGTTAAGGTT
13._GC-01-066-4-02
AAGGTT__TTTTCCGGCCGGTTAAGGTT
14._EET_400_[ECU]
AAGGTT__TTTTCCGGCCGGTTAAGGTT
15._GC-01-066-4-02
AAGGTT__TTTTCCGGCCGGTTAAGGTT
16._GC-01-066-4-02
AAGGTT__TTTTCCGGCCGGTTAAGGTT
17._GC-01-066-4-02
AAGGTT__TTTTCCGGCCGGTTAAGGTT
18._EET_400_[ECU]
AAGGTT__TTTTCCGGCCGGTTAAGGTT
19._EET_400_[ECU]
AAGGTT__TTTTCCGGCCGGTTAAGGTT
20._EET_400_[ECU]
AAGGTT__TTTTCCGGCCGGTTAAGGTT
21._MITC-000396
AACGAGAAAGAC__GGGGAAAAATCCGG
22._EET_400_[ECU]_Fld#_153_Plt#_2
AACGAGCCAAAC__GGGGAAAGATGGAG
 1516171819202122232425262728
_Input profile
CTCGGGAACTACGGGGCTACAGGGAACC
1._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
2._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
3._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
4._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
5._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
6._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
7._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
8._RUQ_760
CTCGGGAACTACGGGGCTACAGGGAACT
9._RUQ_760
TTCGGG__CTACCGGGCTACAG__AACT
10._EET_400_[ECU]
CCGGGGAATTCCGGTTCCACAAGGAACC
11._GC-01-066-4-02
TTCGGGAACCAAGGTTCCCCAAGGAACC
12._EET_400_[ECU]
TTCGGGAACCAAGGTTCCCCAAGGAACC
13._GC-01-066-4-02
TTCGGGAACCAAGGTTCCCCAAGGAACC
14._EET_400_[ECU]
TTCGGGAACCAAGGTTCCCCAAGGAACC
15._GC-01-066-4-02
TTCGGGAACCAAGGTTCCCCAAGGAACC
16._GC-01-066-4-02
TTCGGGAACCAAGGTTCCCCAAGGAACC
17._GC-01-066-4-02
TTCGGGAACCAAGGTTCCCCAAGGAACC
18._EET_400_[ECU]
TTCGGGAACCAAGGTTCCCCAAGGAACC
19._EET_400_[ECU]
TTCGGGAACCAAGGTTCCCCAAGGAACC
20._EET_400_[ECU]
TTCGGGAACCAAGGTTCCCCAAGGAACC
21._MITC-000396
AGCCCC__AAACCGCC__AC__AGAAAG
22._EET_400_[ECU]_Fld#_153_Plt#_2
AGGGAC__AGACCGCC__AC__AGAAAG
 29303132333435       
_Input profile
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
1._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
2._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
3._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
4._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
6._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
7._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
8._RUQ_760
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
9._RUQ_760
AGCCCTGTAC____X_XX_XX_XX_XX_XX_XX_X
10._EET_400_[ECU]
AAACCTGGACATGGX_XX_XX_XX_XX_XX_XX_X
11._GC-01-066-4-02
GGAACTGGAATTGGX_XX_XX_XX_XX_XX_XX_X
12._EET_400_[ECU]
GGAACTGGAATTGGX_XX_XX_XX_XX_XX_XX_X
13._GC-01-066-4-02
GGAA__GGAATTGGX_XX_XX_XX_XX_XX_XX_X
14._EET_400_[ECU]
GGAA__GGAATTGGX_XX_XX_XX_XX_XX_XX_X
15._GC-01-066-4-02
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
16._GC-01-066-4-02
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
17._GC-01-066-4-02
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
18._EET_400_[ECU]
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
19._EET_400_[ECU]
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
20._EET_400_[ECU]
GGAACCGGAATTGGX_XX_XX_XX_XX_XX_XX_X
21._MITC-000396
AGCCAAAACCATCGX_XX_XX_XX_XX_XX_XX_X
22._EET_400_[ECU]_Fld#_153_Plt#_2
AGCCAAACACAACGX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU]

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._EET_400_[ECU]

98.6 %
35 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

2._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

8._EET_400_[ECU] RUQ_760

97.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU]

70 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

66.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_400_[ECU]

66.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

65.2 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._EET_400_[ECU]

65.2 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_400_[ECU]

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._EET_400_[ECU]

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

64.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

41.9 %
31 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

41.9 %
31 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25