SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTACTTGTCTCCAAGGCCAA
1._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAG
8._EET_400_[ECU]___
__AGCCTT__ACTTGTCT____GGCCAA
9._EET_400_[ECU]___
__AGCCTT______GT________CCAA
10._EET_400_[ECU]___
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
11._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
12._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
13._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
14._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
15._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
16._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
17._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
18._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
19._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
20._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
21._EET_400_[ECU]___
GGAACGAGAGAAAGAC____AAGGGGAA
22._EET_400_[ECU]___
GGAACGAGAGCCAAAC____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
2._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
3._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
4._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
5._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
6._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
7._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
8._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
9._EET_400_[ECU]___
________TTCGGG__CTACCGGGCTAC
10._EET_400_[ECU]___
CTAACGTTCCGGGGAATTCCGGTTCCAC
11._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
12._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
13._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
14._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
15._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
16._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
17._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
18._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._EET_400_[ECU]___
AAATCCGGAGCCCC__AAACCGCC__AC
22._EET_400_[ECU]___
AGATGGAGAGGGAC__AGACCGCC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._EET_400_[ECU]___
AGGGAACCAG__CCCTGTACATGGX_XX_X
9._EET_400_[ECU]___
AG__AACTAGCCCCCTGTAC____X_XX_X
10._EET_400_[ECU]___
AAGGAACCAACCACCTGGACATGGX_XX_X
11._EET_400_[ECU]___
AAGGAACCGGCCAACTGGAATTGGX_XX_X
12._EET_400_[ECU]___
AAGGAACCGGCCAACTGGAATTGGX_XX_X
13._EET_400_[ECU]___
AAGGAACCGGCCAA__GGAATTGGX_XX_X
14._EET_400_[ECU]___
AAGGAACCGGCCAA__GGAATTGGX_XX_X
15._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
16._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
17._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
18._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
21._EET_400_[ECU]___
__AGAAAGAGGGCCAAAACCATCGX_XX_X
22._EET_400_[ECU]___
__AGAAAGAGGGCCAAACACAACGX_XX_X

Input profile: EET_400_[ECU]

 
Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

1._EET_400_[ECU]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

2._EET_400_[ECU] GC-01-066-4-02

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EET_400_[ECU]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._EET_400_[ECU]

98.6 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU]

71.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

40 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

40 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25