SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAG
1._EET_399_[ECU]___
____GG________GT__CT__AA__GG
2._EET_399_[ECU]___
__AGCCTT______GG________CCAA
3._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
15._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
16._EET_399_[ECU]___
CCAGCCTTCTACTTGGCTCCAAGGCCAA
17._EET_399_[ECU]___
____CC________GG__CC__GG__AA
18._EET_399_[ECU]___
GGAGGGAAAGACAA______AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._EET_399_[ECU]___
__________GGGGAG__CCCC____CC
2._EET_399_[ECU]___
________TTCGGT__CTACGGGGCTAC
3._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
4._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
5._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
6._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
7._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
8._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
9._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
10._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
11._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
12._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
13._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
14._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
15._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
16._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
17._EET_399_[ECU]___
__________CGGTAA__ACGG____AC
18._EET_399_[ECU]___
AAAACGAGAGCGAC__AGACGGCC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._EET_399_[ECU]___
________AA________AC____X_XX_X
2._EET_399_[ECU]___
AG__AACCGGGGCCCTGTAC____X_XX_X
3._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
4._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
5._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
6._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
7._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
8._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
9._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
10._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
11._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
12._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
13._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
14._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
15._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
16._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
17._EET_399_[ECU]___
________GG________AC____X_XX_X
18._EET_399_[ECU]___
__GGAAGGGGCCCCAGACACATGGX_XX_X

Input profile: EET_399_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

1._EET_399_[ECU] RUQ_745

73.1 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._EET_399_[ECU] RUQ_745

66.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

6._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

9._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._EET_399_[ECU]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

11._EET_399_[ECU]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

13._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

15._EET_399_[ECU]

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

16._EET_399_[ECU] RUQ_745

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745B

53.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._EET_399_[ECU] RUQ_745

39.7 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25