SNP Profiles of EET 399 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAG
1._RUQ_745
____GG________GT__CT__AA__GG
2._RUQ_745
__AGCCTT______GG________CCAA
3._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
15._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
16._RUQ_745
CCAGCCTTCTACTTGGCTCCAAGGCCAA
17._RUQ_745B
____CC________GG__CC__GG__AA
18._RUQ_745
GGAGGGAAAGACAA______AAGGGGAA
 1516171819202122232425262728
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._RUQ_745
__________GGGGAG__CCCC____CC
2._RUQ_745
________TTCGGT__CTACGGGGCTAC
3._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGG__CTAC
4._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCT__
5._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCT__
6._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGG__CTAC
7._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
8._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
9._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
10._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
11._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
12._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
13._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
14._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
15._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
16._RUQ_745
TTAACGCTCTCGGTAACTACGGGGCTAC
17._RUQ_745B
__________CGGTAA__ACGG____AC
18._RUQ_745
AAAACGAGAGCGAC__AGACGGCC__AC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._RUQ_745
________AA________AC____X_XX_X
2._RUQ_745
AG__AACCGGGGCCCTGTAC____X_XX_X
3._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
4._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
5._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
6._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
7._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
8._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
9._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
10._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
11._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
12._EET_399_[ECU]
AGGGAACCGGGGCC__GTACATGGX_XX_X
13._GC-04-047-3-11
AGGGAACCGGGGCC__GTACATGGX_XX_X
14._GC-04-047-3-11
AGGGAACCGGGGCC__GTACATGGX_XX_X
15._EET_399_[ECU]
AGGGAACCGGGGCC__GTACATGGX_XX_X
16._RUQ_745
AGGGAACCGGGGCCCTGTACATGGX_XX_X
17._RUQ_745B
________GG________AC____X_XX_X
18._RUQ_745
__GGAAGGGGCCCCAGACACATGGX_XX_X

Input profile: EET_399_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

1._EET_399_[ECU] RUQ_745

73.1 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._EET_399_[ECU] RUQ_745

66.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

9._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._EET_399_[ECU]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

11._EET_399_[ECU]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

13._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

15._EET_399_[ECU]

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

16._EET_399_[ECU] RUQ_745

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745B

53.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

18._EET_399_[ECU] RUQ_745

39.7 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25