SNP Profiles of PA 175 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
GGATCCGGCCAACCGGCCAAGGAAACCT
1._RUQ_37
GGATCCGGCCAACCGGCCAAGGAAACCT
2._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
3._RUQ_37
____CCGGCCAACCGGCCAA__AAACCT
4._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
5._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
6._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
7._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
8._RUQ_37
____CC________GG________AA__
9._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
10._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
11._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
12._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
13._-
GGATCCCCGGAAGGGGGGAAGG__AC__
14._RUQ_37
GGATCCCCGGAAGGGGGGAAGG__AC__
15._MITC-000016
GGATCCCCGGAAGGGGGGAAGG__AC__
 1516171819202122232425262728
_Input profile
GTCGACTTAATTGGCCCCCTCGAATTAA
1._RUQ_37
GTCGACTTAA__GG__CCCTCGAATTAA
2._PA_175_[PER]
GTCGACTTAA__GG__CCCTCGAATTAA
3._RUQ_37
GTCGACTT____GGCCCC________AA
4._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
5._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
6._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
7._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
8._RUQ_37
__CGAC__AATTGG____________AA
9._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
10._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
11._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
12._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
13._-
ACCGACAA__CGCC__GGAGCGAAAAAA
14._RUQ_37
ACCGACAA__CGCC__GGAGCGAAAAAA
15._MITC-000016
ACCGACAA__CGCC__GGAGCGAAAAAA
 29303132333435363738394041 
_Input profile
CCAGAACCCCTTCCACTTCTCGGGCCX_X
1._RUQ_37
CCAGAACCCCTTCCACTTCTCGGGCCX_X
2._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
3._RUQ_37
CC________TT______CTCGGG__X_X
4._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
5._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
6._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
7._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
8._RUQ_37
__AG__CC__TT________CG____X_X
9._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
10._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
11._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
12._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
13._-
GGAGAA____AAGGACAAAGCGGGGGX_X
14._RUQ_37
GGAGAA____AAGGACAAAGCGGGGGX_X
15._MITC-000016
GGAGAA____AAGGACAAAGCGGGGGX_X

Input profile: PA_175_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

1._PA_175_[PER] RUQ_37

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

3._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

9._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

13._PA_175_[PER] -

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._PA_175_[PER] RUQ_37

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._PA_175_[PER] MITC-000016

51.4 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1144 33TcSNP1165 34TcSNP1253 35TcSNP1270
36TcSNP1350 37TcSNP1414 38TcSNP1442 39TcSNP1458 40TcSNP1484
41TcSNP1520