SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
GGATACGTCTACAGCCAAGGAGACCTGG
1._RUQ_1081
GGATACGTCTACAGCCAAGGAGACCTGG
2._PA_137_[PER]
GGATACGTCTACAGCCAAGGAGACCTGG
3._PA_137_[PER]
GGATACGTCTACAGCCAAGGAGACCTGG
4._PA_137_[PER]
GGATACGTCTACAGCCAAGGAGACCTGG
5._RUQ_1081
____ACGTCTACAGCCAA__AGACCTGG
6._RUQ_1081
____AC______AG________AC____
7._RUQ_36
____ACGT__ACAG__AA__AGACCTGG
8._RUQ_36
GGATACGTCTACAGCCAAGGAGACCTGG
9._RUQ_1081
GGATACGTCTACAGCCAAGGAGACCTGG
10._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
11._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
12._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
13._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
14._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
15._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
16._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
17._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
18._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
19._PA_137_[PER]
GGATACGTCTAAAGCCAAGGAGACCTGG
20._RUQ_36
____AC______AG________AA____
21._RUQ_36
GGATACGTCTACAG__AAGGAGACCTGG
22._GC-05-009-1-09
GGATACGTCTAAAGCCAAGGAGACCTGG
23._GC-05-009-1-09
GGATACGTCTAAAGCCAAGGAGACCTGG
24._GC-05-009-1-09
GGATACGTCTAAAGCCAAGGAGACCTGG
25._GC-05-009-1-09
GGATACGTCTAAAGCCAAGGAGACCTGG
26._GC-05-009-1-09
GGATACGTCTAAAGCCAAGGAGACCTGG
27._GC-05-117-3-19
GGATACGTCTAAAGCCAAGGAGACCTGG
28._GC-05-117-3-19
GGATACGTCTAAAGCCAAGGAGACCTGG
29._GC-05-117-3-19
GGATACGTCTAAAGCCAAGGAGACCTGG
30._GC-05-117-3-19
GGATACGTCTAAAGCCAAGGAGACCTGG
31._GC-05-117-3-19
GGATACGTCTAAAGCCAAGGAGACCTGG
32._PA137[PER]
____AC__CTACAG__AA__________
33._RUQ_36
GGATACACAGACAGGGAAGG__AC__CC
34._MITC-000400
GGATACACAGACAGGGAAGG__AC__CC
35._PA_137_[PER]_Fld#_201_Plt#_2
GGATACACAGACAGGGAAGG__AC__CC
 1516171819202122232425262728
_Input profile
CGCCTTAATTGGCCCCCTCGAACTAGCC
1._RUQ_1081
CGCCTTAA__GG__CCCTCGAACTAGCC
2._PA_137_[PER]
CGCCTTAA__GG__CCCTCGAACTAGCC
3._PA_137_[PER]
CGCCTTAA__GG__CCCTCGAACTAGCC
4._PA_137_[PER]
CGCCTTAA__GG__CCCTCGAACTAGCC
5._RUQ_1081
CGCCTT____GGCCCC________AGCC
6._RUQ_1081
CGCC__AATTGG____________AG__
7._RUQ_36
CG____________CC________AG__
8._RUQ_36
CGCCCTAA__GG__CCCTCGAACTAGCC
9._RUQ_1081
CGCCCTAA__GG__CCCTCGAACTAGCC
10._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
11._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
12._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
13._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
14._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
15._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
16._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
17._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
18._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
19._PA_137_[PER]
CGCCTTAG__GG__CCCTCGAACTAGCC
20._RUQ_36
CGCC__AATTGG____________AG__
21._RUQ_36
CG__TTAA______CCCTCGAACTAG__
22._GC-05-009-1-09
CGCCTTAGCGGGCCCCCTCGAACTAGCC
23._GC-05-009-1-09
CGCCTTAGCGGGCCCCCTCGAACTAGCC
24._GC-05-009-1-09
CGCCTTAGCGGGCCCCCTCGAACTAGCC
25._GC-05-009-1-09
CGCCTTAGCGGGCCCCCTCGAACTAGCC
26._GC-05-009-1-09
CGCCTTAGCGGGCCCCCTCGAACTAGCC
27._GC-05-117-3-19
CGCCTTAGCGGGCCCCCTCGAACTAGCC
28._GC-05-117-3-19
CGCCTTAGCGGGCCCCCTCGAACTAGCC
29._GC-05-117-3-19
CGCCTTAGCGGGCCCCCTCGAACTAGCC
30._GC-05-117-3-19
CGCCTTAGCGGGCCCCCTCGAACTAGCC
31._GC-05-117-3-19
CGCCTTAGCGGGCCCCCTCGAACTAGCC
32._PA137[PER]
CGCC______CCGGCC______CT__CC
33._RUQ_36
CGCCAA__CGCC__GGAGCGAAAGAGGG
34._MITC-000400
CGCCAA__CGCC__GGAGCGAAAGAGGG
35._PA_137_[PER]_Fld#_201_Plt#_2
CGCCAA__CGCC__GGAGCGAAAGAGGG
 293031323334353637383940  
_Input profile
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
1._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
2._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
3._PA_137_[PER]
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
4._PA_137_[PER]
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
5._RUQ_1081
________TT______CTCCGG__X_XX_X
6._RUQ_1081
GG__CC__TT________CC____X_XX_X
7._RUQ_36
________________CT______X_XX_X
8._RUQ_36
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
9._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
10._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._RUQ_36
GG__CC__TT________CC____X_XX_X
21._RUQ_36
GGAA__CCGTCTACTTCTCGAGCCX_XX_X
22._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
27._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
28._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
29._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
30._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
31._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
32._PA137[PER]
__________________GG____X_XX_X
33._RUQ_36
GGAA____AAAGACAAAGGGGGGGX_XX_X
34._MITC-000400
GGAA____AAAGACAAAGGGGGGGX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
GGAA____AAAGACAAAGGGGGGGX_XX_X

Input profile: PA_137_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_137_[PER] RUQ_36

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_137_[PER] RUQ_36

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._PA_137_[PER] RUQ_36

95.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

50 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520