SNP Profiles of LCT EEN 90 View Data

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_Input profile	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
1._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
2._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
3._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
4._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
5._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
6._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
7._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
8._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
9._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
10._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
11._GC-08-089-2-12	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
12._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
13._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
14._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
15._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
16._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
17._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
18._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
19._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
20._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
21._LCT_EEN_90	CC	AA	CC	GG	TT	CC	AA	CC	TT	AA	GG	AC	CC	GG
22._GC-08-89-2-12	CC	AA	CC	CC	AA	CC	AA	GG	TT	AA	__	AC	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CT	GG	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
1._LCT_EEN_90	GG	CC	CT	GG	GG	__	GG	__	TT	CC	GG	TT	TT	AA
2._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
3._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
4._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
5._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
6._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
7._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
8._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
9._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
10._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
11._GC-08-089-2-12	GG	CC	CT	AA	GG	CC	GG	GG	TT	CC	GG	TT	TT	AA
12._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
13._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
14._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
15._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
16._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
17._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
18._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
19._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
20._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
21._LCT_EEN_90	GG	CC	CT	AA	GG	__	GG	__	TT	CC	GG	TT	TT	AA
22._GC-08-89-2-12	GG	CC	AG	__	CC	GG	CC	__	AA	GG	GG	TT	AA	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	CC	GG	TT	CT	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
1._LCT_EEN_90	CC	GG	TT	CT	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
2._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
3._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
4._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
5._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
6._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
7._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
8._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
9._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
10._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
11._GC-08-089-2-12	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
12._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
13._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
14._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
15._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
16._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
17._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
18._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
19._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
20._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
21._LCT_EEN_90	CC	GG	TT	CT	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X
22._GC-08-89-2-12	GG	GG	TT	__	CC	AA	__	GG	AA	GG	GG	GG	X_X	X_X

Input profile: LCT_EEN_90

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2014

1._LCT_EEN_90

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2016

2._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

3._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

5._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

6._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

9._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

10._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._LCT_EEN_90 GC-08-089-2-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 4 > FP

Dapeng Zhang, 2016

13._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 5

Dapeng Zhang, 2016

14._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 6

Dapeng Zhang, 2016

15._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 7

Dapeng Zhang, 2016

16._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 8

Dapeng Zhang, 2016

17._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 9

Dapeng Zhang, 2016

18._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 10

Dapeng Zhang, 2016

19._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 1 > FP

Dapeng Zhang, 2016

20._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 2 > FP

Dapeng Zhang, 2016

21._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 3 > FP

Dapeng Zhang, 2016

22._LCT_EEN_90 GC-08-89-2-12

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership/ CW

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520