SNP Profiles of EQX /O [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	AC	GG	TT	GG	CC	CG	AA	CC	GG	GG	AT	CC
1._RUQ_138	__	__	AC	GG	TT	__	CC	CG	AA	CC	__	__	AT	__
2._GC-07-077-4-21	TT	CC	CC	GG	CC	GG	CC	CC	AG	CC	GG	GG	AA	CC
3._GC-07-087-5-22	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
4._EQX_/O_[CHA]	__	__	CC	GG	CC	__	CC	CC	AG	CC	__	__	AA	__
5._EQX_/O_[CHA]	__	__	AC	GT	CC	__	AA	CC	AG	CC	__	__	AA	__
6._GC-07-077-4-21	TT	AC	AC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AA	CC
7._GC-07-077-4-21	TT	AC	AC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AA	CC
8._GC-07-087-5-22	TT	AC	AC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AA	CC
9._GC-07-087-5-22	TT	AC	AC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AA	CC
10._EQX_/O_[CHA]	__	__	AC	GT	CC	__	AA	CC	GG	CC	__	__	AA	__
11._EQX_/O_[CHA]	__	__	AC	GT	CC	__	AA	CC	GG	CC	__	__	AA	__
12._EQX_/O_[CHA]	__	__	AC	GT	CC	__	AA	CC	GG	CC	__	__	AA	__
13._EQX_/O_[CHA]	__	__	AC	GT	CC	__	AA	CC	GG	CC	__	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CT	GT	CG	AC	CT	CT	CT	GT	AG	TT	CC	CG
1._RUQ_138	AG	AC	CT	GT	GG	AC	__	CT	__	GT	__	__	__	CG
2._GC-07-077-4-21	AA	AC	CC	GT	CG	CC	CC	TT	CT	GG	AG	TT	AA	GG
3._GC-07-087-5-22	AA	AC	CT	TT	CC	AC	TT	TT	CT	GG	GG	TT	AA	GG
4._EQX_/O_[CHA]	AA	AC	CC	GT	CG	CC	__	TT	__	GG	__	__	__	GG
5._EQX_/O_[CHA]	AA	AC	CT	TT	CC	AC	__	TT	__	GG	__	__	__	GG
6._GC-07-077-4-21	AG	CC	TT	TT	CG	AC	CT	TT	CC	GT	GG	TT	AA	CC
7._GC-07-077-4-21	AG	CC	TT	TT	CG	AC	CT	TT	CC	GT	GG	TT	AA	CC
8._GC-07-087-5-22	AG	CC	TT	TT	CG	AC	CT	TT	CC	GT	GG	TT	AA	CC
9._GC-07-087-5-22	AG	CC	TT	TT	CG	AC	CT	TT	CC	GT	GG	TT	AA	CC
10._EQX_/O_[CHA]	AG	CC	TT	TT	CG	AC	__	TT	__	GT	__	__	__	CC
11._EQX_/O_[CHA]	AG	CC	TT	TT	CG	AC	__	TT	__	GT	__	__	__	CC
12._EQX_/O_[CHA]	AG	CC	TT	TT	CG	AC	__	TT	__	GT	__	__	__	CC
13._EQX_/O_[CHA]	AG	CC	TT	TT	CG	AC	__	TT	__	GT	__	__	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	CT	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT	AG	X_X	X_X
1._RUQ_138	CT	AA	__	CC	__	__	__	TT	__	__	TT	AG	X_X	X_X
2._GC-07-077-4-21	CC	__	CC	CC	GG	GG	TT	TT	TT	CC	CC	GG	X_X	X_X
3._GC-07-087-5-22	CC	AG	CT	CC	GG	GG	TT	TT	TT	CT	CC	AG	X_X	X_X
4._EQX_/O_[CHA]	CC	__	__	CC	__	__	__	TT	__	__	CC	GG	X_X	X_X
5._EQX_/O_[CHA]	CC	AG	__	CC	__	__	__	TT	__	__	CC	AG	X_X	X_X
6._GC-07-077-4-21	CC	AG	CT	CT	GT	AA	AT	TT	TT	TT	CT	AA	X_X	X_X
7._GC-07-077-4-21	CC	AG	CT	CT	GT	AA	AT	TT	TT	TT	CT	AA	X_X	X_X
8._GC-07-087-5-22	CC	AG	CT	CT	GT	AA	AT	TT	TT	TT	CT	AA	X_X	X_X
9._GC-07-087-5-22	CC	AG	CT	CT	GT	AA	AT	TT	TT	TT	CT	AA	X_X	X_X
10._EQX_/O_[CHA]	CC	AG	__	CT	__	__	__	TT	__	__	CT	AA	X_X	X_X
11._EQX_/O_[CHA]	CC	AG	__	CT	__	__	__	TT	__	__	CT	AA	X_X	X_X
12._EQX_/O_[CHA]	CC	AG	__	CT	__	__	__	TT	__	__	CT	AA	X_X	X_X
13._EQX_/O_[CHA]	CC	AG	__	CT	__	__	__	TT	__	__	CT	AA	X_X	X_X

Input profile: EQX_/O_[CHA] RUQ_138

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EQX_/O_[CHA] RUQ_138

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._EQX_/O_[CHA] GC-07-077-4-21

71.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._EQX_/O_[CHA] GC-07-087-5-22

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._EQX_/O_[CHA]

63.6 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 2

Dapeng Zhang, 2016

5._EQX_/O_[CHA]

60.9 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 1 > FP

Dapeng Zhang, 2016

6._EQX_/O_[CHA] GC-07-077-4-21

58.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._EQX_/O_[CHA] GC-07-077-4-21

58.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._EQX_/O_[CHA] GC-07-087-5-22

58.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._EQX_/O_[CHA] GC-07-087-5-22

58.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._EQX_/O_[CHA]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 4 > FP

Dapeng Zhang, 2016

11._EQX_/O_[CHA]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7522 2 > FP

Dapeng Zhang, 2016

12._EQX_/O_[CHA]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 3

Dapeng Zhang, 2016

13._EQX_/O_[CHA]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1484