SNP Profiles of EET 400 [ECU]   View Data

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 Key

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_Input profile
CTCCACGTCTCCCCAGCTAGGGAACCAG
1._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
2._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
3._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
4._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
5._RUQ_760
____ACGTCTCCCCAGCT____AA__AG
6._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
7._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
8._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
9._EET_400_[ECU]
____ACGTCTCC__AGCC____AA__AG
10._GC-01-066-4-02
TTCCAAGGCTAACCGGCCGGGGAACCAA
11._GC-01-066-4-02
TTCCAAGG__AACCGGCCGGGGAACCAA
12._GC-01-066-4-02
TTCCAAGGCCAACCGGCCGGGGAACCAA
13._GC-01-066-4-02
TTCCAAGGCCAACCGGCCGGGGAACCAA
14._GC-01-066-4-02
TTCCAAGGCCAACCGGCCGGGGAACCAA
15._EET_400_[ECU]
____AAGGCTAACCGGCC____AA__AA
16._EET_400_[ECU]
____ACGGCTACCCAACC____AA__AA
17._EET_400_[ECU]
____AAGG__AACCGGCC____AA__AA
18._EET_400_[ECU]
____AAGGCCAACCGGCC____AA__AA
19._EET_400_[ECU]
____AAGGCCAACCGGCC____AA__AA
20._EET_400_[ECU]
____AAGGCCAACCGGCC____AA__AA
21._EET_400_[ECU]_Fld#_153_Plt#_2
AGACACACAACCGGAGAGGGGGAACC__
22._MITC-000396
AGACCCAAAACCGGAGAGAAGGAACG__
 1516171819202122232425262728
_Input profile
ACCTGGCGACCCCTTTGGAGTTACCGCC
1._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
2._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
3._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
4._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
5._RUQ_760
ACCTGGGGAC__CT__GG______CG__
6._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
7._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
8._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
9._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
10._GC-01-066-4-02
CCCCTTGGAACCCCCCGGGGTTCCCGCC
11._GC-01-066-4-02
CCCCTTGGAACCCCCCGGGGTTCCCGCC
12._GC-01-066-4-02
CCCCTTGGAACCCCCCGGGGTTCCCGCC
13._GC-01-066-4-02
CCCCTTGGAACCCCCCGGGGTTCCCGCC
14._GC-01-066-4-02
CCCCTTGGAACCCCCCGGGGTTCCCGCC
15._EET_400_[ECU]
CCCCTTGGAA__CC__GG______CG__
16._EET_400_[ECU]
ACCCTTGGCC__TT__GG______GG__
17._EET_400_[ECU]
CCCCTTGGAA__CC__GG______CG__
18._EET_400_[ECU]
CCCCTTGGAA__CC__GG______CG__
19._EET_400_[ECU]
CCCCTTGGAA__CC__GG______CG__
20._EET_400_[ECU]
CCCCTTGGAA__CC__GG______CG__
21._EET_400_[ECU]_Fld#_153_Plt#_2
AC__CCCGACGGAG__ACAAAACCGG__
22._MITC-000396
AC__CCCGACGGAA__CCAGAACCCC__
 29303132333435363738394041 
_Input profile
TTAACCCCGGGGTTGTCCCCTTCCAGX_X
1._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
2._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
3._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
4._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
5._RUQ_760
CTAG__CC______GT____TTCCAGX_X
6._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
7._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
8._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
9._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
10._GC-01-066-4-02
TTGGCCCCGGGGTTTTTTCCTTGGAAX_X
11._GC-01-066-4-02
TTGGCCCCGGGGTTTTTTCCTTGGAAX_X
12._GC-01-066-4-02
TTGGCCCCGGGGTTTTTTCCTTGGAAX_X
13._GC-01-066-4-02
TTGGCCCCGGGGTTTTTTCCTTGGAAX_X
14._GC-01-066-4-02
TTGGCCCCGGGGTTTTTTCCTTGGAAX_X
15._EET_400_[ECU]
TTGG__CC______TT____TTGGAAX_X
16._EET_400_[ECU]
CCAG__CC______TT____CCGGAGX_X
17._EET_400_[ECU]
TTGG__CC______TT____TTGGAAX_X
18._EET_400_[ECU]
TTGG__CC______TT____TTGGAAX_X
19._EET_400_[ECU]
TTGG__CC______TT____TTGGAAX_X
20._EET_400_[ECU]
TTGG__CC______TT____TTGGAAX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
AGAA__GGCCAG__ACGGGGAGCGAAX_X
22._MITC-000396
AGAA__GGCCAG__ACGGGGAGCGAAX_X

Input profile: EET_400_[ECU] RUQ_760

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

2._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

4._EET_400_[ECU]

95.8 %
24 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

5._EET_400_[ECU] RUQ_760

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._EET_400_[ECU]

93.5 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

10._EET_400_[ECU] GC-01-066-4-02

65.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_400_[ECU] GC-01-066-4-02

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._EET_400_[ECU]

58.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

16._EET_400_[ECU]

58.3 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

17._EET_400_[ECU]

56.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._EET_400_[ECU]

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

40 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

38.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484