SNP Profiles of EET 400 [ECU] View Data

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_Input profile	CT	CC	AC	GT	CT	CC	CC	AG	CT	AG	GG	AA	CC	AG
1._EET_400_[ECU]	__	__	AC	GT	CT	CC	CC	AG	CT	__	__	AA	__	AG
2._EET_400_[ECU]	__	__	AC	GT	CT	CC	CC	AG	CT	__	__	AA	__	AG
3._EET_400_[ECU]	__	__	AC	GT	CT	CC	CC	AG	CT	__	__	AA	__	AG
4._EET_400_[ECU]	__	__	AC	GT	CT	CC	CC	AG	CT	__	__	AA	__	AG
5._RUQ_760	__	__	AC	GT	CT	CC	CC	AG	CT	__	__	AA	__	AG
6._GC-01-066-4-02	CT	CC	AC	GT	CT	CC	CC	AG	CT	AG	GG	AA	CG	AG
7._GC-01-066-4-02	CT	CC	AC	GT	CT	CC	CC	AG	CT	AG	GG	AA	CG	AG
8._GC-01-066-4-02	CT	CC	AC	GT	CT	CC	CC	AG	CT	AG	GG	AA	CG	AG
9._EET_400_[ECU]	__	__	AC	GT	CT	CC	__	AG	CC	__	__	AA	__	AG
10._GC-01-066-4-02	TT	CC	AA	GG	CT	AA	CC	GG	CC	GG	GG	AA	CC	AA
11._GC-01-066-4-02	TT	CC	AA	GG	__	AA	CC	GG	CC	GG	GG	AA	CC	AA
12._GC-01-066-4-02	TT	CC	AA	GG	CC	AA	CC	GG	CC	GG	GG	AA	CC	AA
13._GC-01-066-4-02	TT	CC	AA	GG	CC	AA	CC	GG	CC	GG	GG	AA	CC	AA
14._GC-01-066-4-02	TT	CC	AA	GG	CC	AA	CC	GG	CC	GG	GG	AA	CC	AA
15._EET_400_[ECU]	__	__	AA	GG	CT	AA	CC	GG	CC	__	__	AA	__	AA
16._EET_400_[ECU]	__	__	AC	GG	CT	AC	CC	AA	CC	__	__	AA	__	AA
17._EET_400_[ECU]	__	__	AA	GG	__	AA	CC	GG	CC	__	__	AA	__	AA
18._EET_400_[ECU]	__	__	AA	GG	CC	AA	CC	GG	CC	__	__	AA	__	AA
19._EET_400_[ECU]	__	__	AA	GG	CC	AA	CC	GG	CC	__	__	AA	__	AA
20._EET_400_[ECU]	__	__	AA	GG	CC	AA	CC	GG	CC	__	__	AA	__	AA
21._EET_400_[ECU]_Fld#_153_Plt#_2	AG	AC	AC	AC	AA	CC	GG	AG	AG	GG	GG	AA	CC	__
22._MITC-000396	AG	AC	CC	AA	AA	CC	GG	AG	AG	AA	GG	AA	CG	__

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_Input profile	AC	CT	GG	CG	AC	CC	CT	TT	GG	AG	TT	AC	CG	CC
1._EET_400_[ECU]	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
2._EET_400_[ECU]	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
3._EET_400_[ECU]	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
4._EET_400_[ECU]	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
5._RUQ_760	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
6._GC-01-066-4-02	AC	CT	GG	GG	AC	CC	CT	CT	GG	AG	TT	AC	CG	CG
7._GC-01-066-4-02	AC	CT	GG	GG	AC	CC	CT	CT	GG	AG	TT	AC	CG	CG
8._GC-01-066-4-02	AC	CT	GG	GG	AC	CC	CT	CT	GG	AG	TT	AC	CG	CG
9._EET_400_[ECU]	AC	CT	GG	GG	AC	__	CT	__	GG	__	__	__	CG	__
10._GC-01-066-4-02	CC	CC	TT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG	CC
11._GC-01-066-4-02	CC	CC	TT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG	CC
12._GC-01-066-4-02	CC	CC	TT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG	CC
13._GC-01-066-4-02	CC	CC	TT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG	CC
14._GC-01-066-4-02	CC	CC	TT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG	CC
15._EET_400_[ECU]	CC	CC	TT	GG	AA	__	CC	__	GG	__	__	__	CG	__
16._EET_400_[ECU]	AC	CC	TT	GG	CC	__	TT	__	GG	__	__	__	GG	__
17._EET_400_[ECU]	CC	CC	TT	GG	AA	__	CC	__	GG	__	__	__	CG	__
18._EET_400_[ECU]	CC	CC	TT	GG	AA	__	CC	__	GG	__	__	__	CG	__
19._EET_400_[ECU]	CC	CC	TT	GG	AA	__	CC	__	GG	__	__	__	CG	__
20._EET_400_[ECU]	CC	CC	TT	GG	AA	__	CC	__	GG	__	__	__	CG	__
21._EET_400_[ECU]_Fld#_153_Plt#_2	AC	__	CC	CG	AC	GG	AG	__	AC	AA	AA	CC	GG	__
22._MITC-000396	AC	__	CC	CG	AC	GG	AA	__	CC	AG	AA	CC	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AA	CC	CC	GG	GG	TT	GT	CC	CC	TT	CC	AG	X_X
1._EET_400_[ECU]	CT	AA	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
2._EET_400_[ECU]	CT	AA	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
3._EET_400_[ECU]	CT	AA	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
4._EET_400_[ECU]	CT	AA	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
5._RUQ_760	CT	AG	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
6._GC-01-066-4-02	CT	AA	CC	CC	GG	GG	TT	GT	__	CC	TT	CC	AG	X_X
7._GC-01-066-4-02	CT	AA	CC	CC	GG	GG	TT	GT	__	CC	TT	CC	AG	X_X
8._GC-01-066-4-02	CT	AA	CC	CC	GG	GG	TT	GT	__	CC	TT	CC	AG	X_X
9._EET_400_[ECU]	CT	AA	__	CC	__	__	__	GT	__	__	TT	CC	AG	X_X
10._GC-01-066-4-02	TT	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AA	X_X
11._GC-01-066-4-02	TT	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AA	X_X
12._GC-01-066-4-02	TT	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AA	X_X
13._GC-01-066-4-02	TT	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AA	X_X
14._GC-01-066-4-02	TT	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AA	X_X
15._EET_400_[ECU]	TT	GG	__	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
16._EET_400_[ECU]	CC	AG	__	CC	__	__	__	TT	__	__	CC	GG	AG	X_X
17._EET_400_[ECU]	TT	GG	__	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
18._EET_400_[ECU]	TT	GG	__	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
19._EET_400_[ECU]	TT	GG	__	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
20._EET_400_[ECU]	TT	GG	__	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
21._EET_400_[ECU]_Fld#_153_Plt#_2	AG	AA	__	GG	CC	AG	__	AC	GG	GG	AG	CG	AA	X_X
22._MITC-000396	AG	AA	__	GG	CC	AG	__	AC	GG	GG	AG	CG	AA	X_X

Input profile: EET_400_[ECU] RUQ_760

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EET_400_[ECU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 9

Dapeng Zhang, 2016

2._EET_400_[ECU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 3

Dapeng Zhang, 2016

3._EET_400_[ECU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 13 > F

Dapeng Zhang, 2016

4._EET_400_[ECU]

95.8 %
24 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Location: OCHO CASAS #1

Dapeng Zhang, 2016

5._EET_400_[ECU] RUQ_760

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

7._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._EET_400_[ECU]

93.5 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

10._EET_400_[ECU] GC-01-066-4-02

65.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._EET_400_[ECU] GC-01-066-4-02

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

12._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._EET_400_[ECU] GC-01-066-4-02

64.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._EET_400_[ECU]

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 5

Dapeng Zhang, 2016

16._EET_400_[ECU]

58.3 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

17._EET_400_[ECU]

56.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 10 > F

Dapeng Zhang, 2016

18._EET_400_[ECU]

56.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 2

Dapeng Zhang, 2016

19._EET_400_[ECU]

56.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 7

Dapeng Zhang, 2016

20._EET_400_[ECU]

56.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 1 > FP

Dapeng Zhang, 2016

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

40 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 153, Tree: 2

22._EET_400_[ECU] MITC-000396

38.6 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484