SNP Profiles of EET 272 [ECU]**   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
2._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
3._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
4._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
5._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
6._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
7._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
8._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
9._EET_272_[ECU]
____AC__CT__AACCAACT________
10._RUQ_6
____AC__________AA__AG______
11._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
12._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
13._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
14._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
15._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
16._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
17._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
18._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
19._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._GC-03-032-3-11
TTCCCCGGCCGG__CCAGCCGGGGAACC
21._EET_272_[ECU]
____CCGGCC__AACCAGCC____AA__
22._EET_272_[ECU]
____CCGGCC____CCAGCC____AA__
23._RUQ_6
AACCACCCAGGGAAGGAAAGAGGGAAGG
24._MITC-000381
AACCACCCAGGGAAGGAAAGAGGGAAGG
25._GC-03-32-3-11
AACCCCCCGGGGACGGAGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
2._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
3._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
4._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
5._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
6._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
7._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
8._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
9._EET_272_[ECU]
AA__CTGT__AA__CT__GG________
10._RUQ_6
__AC____GG__CC__TTGGGG__ACCC
11._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
12._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
13._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
14._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
15._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
16._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
17._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
18._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
19._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
20._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
21._EET_272_[ECU]
AAACCCGTCGCC__TT__GG______GG
22._EET_272_[ECU]
AAACCCGTCGCC__TT__GG______GG
23._RUQ_6
__CC__ACGGAAGGAG__CCGGAAACGG
24._MITC-000381
__CC__ACGGAAGGAG__CCGGAAACGG
25._GC-03-32-3-11
__AC__ACCGCCAGAA__CCAGAAAACC
 29303132333435363738394041 
_Input profile
CCTTAGCTGGGGTTTTTTCCTTCCAAX_X
1._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
2._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
3._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
4._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
5._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
6._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
7._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
8._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
9._EET_272_[ECU]
__CTAGCT______TT____TT__AAX_X
10._RUQ_6
____AG________TT______CC__X_X
11._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
12._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
13._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
14._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
15._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
16._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
17._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
18._GC-03-032-3-11
CCCTAGCTGGGGTTTT__CCTTCCAAX_X
19._GC-03-032-3-11
CCCCAGCCGGGGTTTTTTCCCCGGGGX_X
20._GC-03-032-3-11
CCCCAGCCGGGGTTTTTTCCCCGGGGX_X
21._EET_272_[ECU]
__CCAGCC______TT____CCGGGGX_X
22._EET_272_[ECU]
__CCAGCC______TT____CCGGGGX_X
23._RUQ_6
__AGAGAGCCGG__AAAAGGAAGGAAX_X
24._MITC-000381
__AGAGAGCCGG__AAAAGGAAGGAAX_X
25._GC-03-32-3-11
__GGAGGGCCGG__AAAAGGGGCCGGX_X

Input profile: EET_272_[ECU] RUQ_6

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

4._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

5._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

8._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

97.2 %
18 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

10._EET_272_[ECU] RUQ_6

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

11._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._EET_272_[ECU] GC-03-032-3-11

68.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

67.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

54.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

33.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484