SNP Profiles of EET 19 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CTACCCGTCTGGCCCCAGCCGGGGATCC
1._RUQ_1630
__CC_____AG_GG___
2._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
3._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
4._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
5._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
6._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
7._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
8._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
9._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
10._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
11._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
12._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
13._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
14._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
15._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
16._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
17._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
18._RUQ_1630
__CCGTCT_CCCCAGCC__AT_
19._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
20._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
21._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
22._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
23._EET_19_[ECU]
__CCGTCT_CCCCAGCC__AT_
24._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
25._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
26._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
27._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
28._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
29._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
30._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
31._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
32._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
33._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
34._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
35._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
36._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
37._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
38._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
39._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
40._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
41._RUQ_1630
__CC_CTGGCCGGAG__GGATCC
42._MITC-000062
AAACCCCCAAAGCCCGAAAGGGAGATGG
 1516171819202122232425262728
_Input profile
GGACCTGGCGCCCTTTCTGGAGGTACGG
1._RUQ_1630
_AC__CGCCCT_CTGGAG_ACGG
2._GC-05-184-4-37
GG_CTGGCGCCCTTTCTGGAGGTACGG
3._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
4._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
5._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
6._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
7._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
8._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
9._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
10._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
11._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
12._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
13._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
14._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
15._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
16._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
17._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
18._RUQ_1630
GGACCTGGCGCC_TT_GG___GG
19._EET_19_[ECU]
GGACCTGGCGCC_TT_GG___GG
20._EET_19_[ECU]
GG_CTGGCGCC_TT_GG___GG
21._EET_19_[ECU]
GG_CTGGCGCC_TT_GG___GG
22._EET_19_[ECU]
GG_CTGGCGCC_TT_GG___GG
23._EET_19_[ECU]
GGACCTGGCGCC___GG___GG
24._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
25._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
26._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
27._GC-05-184-4-37
GGACCTGGCGCCCTTTCTGGAGGTACGG
28._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
29._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
30._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
31._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
32._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
33._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
34._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
35._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
36._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
37._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
38._GC-05-184-4-37
GGACCTGGCGCCCT_CTGGAGGTACGG
39._GC-05-184-4-37
GG_CTGGCGCCCTTTCTGGAGGTACGG
40._GC-05-184-4-37
GG_CTGGCGCCCTTTCTGGAGGTACGG
41._RUQ_1630
____CGCCCT______CC
42._MITC-000062
_AC_ACCGCCGGGG_CCAGACCCCG
 2930313233343536373839404142
_Input profile
CGTTAGCCCCGTGGATGTCTCTCTCGAG
1._RUQ_1630
__AGCC____GT___CG_
2._GC-05-184-4-37
CGCTAGCCCCGTGGATGT_CTCTCGAG
3._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
4._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
5._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
6._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
7._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
8._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
9._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
10._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
11._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
12._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
13._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
14._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
15._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
16._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
17._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
18._RUQ_1630
_CTAG_CC___GT__CTCGAG
19._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
20._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
21._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
22._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
23._EET_19_[ECU]
_CTAG_CC___GT__CTCGAG
24._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
25._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
26._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
27._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
28._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
29._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
30._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
31._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
32._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
33._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
34._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
35._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
36._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
37._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
38._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
39._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
40._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
41._RUQ_1630
CGCT__CC_GGAT__CT_CG_
42._MITC-000062
_AGAA_GGACGG_CCAGGGAACGAG

Input profile: EET_19_[ECU] RUQ_1630

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_19_[ECU] RUQ_1630

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._EET_19_[ECU] GC-05-184-4-37

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

5._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

6._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

7._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

8._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

9._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

10._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

11._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

12._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

13._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

14._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

15._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

16._EET_19_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

17._EET_19_[ECU]

97.9 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

18._EET_19_[ECU] RUQ_1630

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EET_19_[ECU]

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

20._EET_19_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

21._EET_19_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

22._EET_19_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

23._EET_19_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

24._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

26._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_19_[ECU] GC-05-184-4-37

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

28._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

33._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

36._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

37._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

38._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

39._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

41._EET_19_[ECU] RUQ_1630

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

43.1 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484