SNP Profiles of EET 19   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTACCCGTCTGGCCCCAGCCGGGGATCC
1._RUQ_1630
____CC__________AG__GG______
2._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
3._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
4._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
5._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
6._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
7._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
8._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
9._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
10._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
11._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
12._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
13._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
14._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
15._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
16._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
17._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
18._RUQ_1630
____CCGTCT__CCCCAGCC____AT__
19._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
20._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
21._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
22._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
23._EET_19_[ECU]
____CCGTCT__CCCCAGCC____AT__
24._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
25._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
26._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
27._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
28._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
29._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
30._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
31._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
32._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
33._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
34._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
35._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
36._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
37._GC-08-085-2-08
CTACCCGTCTGGCCCCAGCCGGGGATCC
38._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
39._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
40._GC-05-184-4-37
CTACCCGTCTGGCCCCAGCCGGGGATCC
41._RUQ_1630
____CC__CTGGCCGGAG____GGATCC
42._MITC-000062
AAACCCCCAAAGCCCGAAAGGGAGATGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCTGGCGCCCTTTCTGGAGGTACGG
1._RUQ_1630
__AC____CGCCCT__CTGGAG__ACGG
2._GC-05-184-4-37
GG__CTGGCGCCCTTTCTGGAGGTACGG
3._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
4._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
5._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
6._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
7._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
8._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
9._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
10._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
11._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
12._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
13._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
14._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
15._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
16._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
17._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
18._RUQ_1630
GGACCTGGCGCC__TT__GG______GG
19._EET_19_[ECU]
GGACCTGGCGCC__TT__GG______GG
20._EET_19_[ECU]
GG__CTGGCGCC__TT__GG______GG
21._EET_19_[ECU]
GG__CTGGCGCC__TT__GG______GG
22._EET_19_[ECU]
GG__CTGGCGCC__TT__GG______GG
23._EET_19_[ECU]
GGACCTGGCGCC______GG______GG
24._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
25._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
26._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
27._GC-05-184-4-37
GGACCTGGCGCCCTTTCTGGAGGTACGG
28._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
29._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
30._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
31._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
32._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
33._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
34._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
35._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
36._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
37._GC-08-085-2-08
GGACCTGGCGCCCTTTCTGGAGGTACGG
38._GC-05-184-4-37
GGACCTGGCGCCCT__CTGGAGGTACGG
39._GC-05-184-4-37
GG__CTGGCGCCCTTTCTGGAGGTACGG
40._GC-05-184-4-37
GG__CTGGCGCCCTTTCTGGAGGTACGG
41._RUQ_1630
________CGCCCT____________CC
42._MITC-000062
__AC__ACCGCCGGGG__CCAGACCCCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGTTAGCCCCGTGGATGTCTCTCTCGAG
1._RUQ_1630
____AGCC________GT______CG__
2._GC-05-184-4-37
CGCTAGCCCCGTGGATGT__CTCTCGAG
3._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
4._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
5._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
6._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
7._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
8._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
9._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
10._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
11._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
12._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
13._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
14._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
15._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
16._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
17._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
18._RUQ_1630
__CTAG__CC______GT____CTCGAG
19._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
20._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
21._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
22._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
23._EET_19_[ECU]
__CTAG__CC______GT____CTCGAG
24._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
25._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
26._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
27._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
28._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
29._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
30._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
31._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
32._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
33._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
34._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
35._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
36._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
37._GC-08-085-2-08
CGCTAGCCCCGTGGATGTTTCTCTCGAG
38._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
39._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
40._GC-05-184-4-37
CGCTAGCCCCGTGGATGTTTCTCTCGAG
41._RUQ_1630
CGCT____CC__GGAT____CT__CG__
42._MITC-000062
__AGAA__GGACGG__CCAGGGAACGAG

Input profile: EET_19_[ECU] RUQ_1630

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_19_[ECU] RUQ_1630

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.246 Cri
0.121 Nac
0.612

2._EET_19_[ECU] GC-05-184-4-37

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016

4._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

5._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

6._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

7._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

8._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

9._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

10._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

11._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

12._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

13._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

14._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

15._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

16._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

17._EET_19_[ECU]

97.9 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

18._EET_19_[ECU] RUQ_1630

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EET_19_[ECU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

20._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

21._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

22._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

23._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

24._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

26._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_19_[ECU] GC-05-184-4-37

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

28._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

33._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

36._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

37._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

38._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

39._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

41._EET_19_[ECU] RUQ_1630

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

43.1 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484