SNP Profiles of CRU 156   View Data

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 Key

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_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._RUQ_880
____AAGTTT__AACCGGCC____AA__
2._GC-01-131-7-08
CTCCAAGTCTGGACGGAGCTAGAGATCG
3._GC-01-131-7-08
CTCCAAGTCTGGACGGAGCTAGAGATCG
4._GC-01-131-7-08
CTCCAAGTCTGGACGGAGCTAGAGATCG
5._GC-01-131-7-08
CTCCAAGTCTGGACGGAGCTAGAGATCG
6._GC-01-131-7-08
CTCCAAGTCTGGACGGAGCTAGAGATCG
7._CRU_156
____AAGTCT__ACGGAGCT____AT__
8._CRU_156
____AAGTCT__ACGGAGCT____AT__
9._CRU_156
____AAGTCT__ACGGAGCT____AT__
10._CRU_156
____AAGTCT__ACGGAGCT____AT__
11._CRU_156
____AAGTCT__ACGGAGCT____AT__
12._RUQ_880
____CC__________AG__AG______
13._CRU_156
____ACGTCT__CCGGAACT____AA__
14._RUQ_880
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGAACCGGCCCCCCCCCCGGAATTAAGG
1._RUQ_880
AGAACCGGCCCC__CC__GG______GG
2._GC-01-131-7-08
AACCCCGTCCACCCCTCCGGGGGTACCC
3._GC-01-131-7-08
AACCCCGTCCACCCCTCCGGGGGTACCC
4._GC-01-131-7-08
AACCCCGTCCACCCCTCCGGGGGTACCC
5._GC-01-131-7-08
AACCCCGTCCACCCCTCCGGGGGTACCC
6._GC-01-131-7-08
AACCCCGTCCACCCCTCCGGGGGTACCC
7._CRU_156
AACCCCGTCCAC__CT__GG______CC
8._CRU_156
AACCCCGTCCAC__CT__GG______CC
9._CRU_156
AACCCCGTCCAC__CT__GG______CC
10._CRU_156
AACCCCGTCCAC__CT__GG______CC
11._CRU_156
AACCCCGTCCAC__CT__GG______CC
12._RUQ_880
__CC____CCCCCC__CCGTGG__CCGG
13._CRU_156
AAACCTGGGGAC______GG______CC
14._RUQ_880
__AA__CCCCCCGGGG__CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTTTCCCCGGGG
1._RUQ_880
__CCAG__CC______TT____CCGGGG
2._GC-01-131-7-08
CCCCAATTCTGTAGATGTTTCCCTCGAA
3._GC-01-131-7-08
CCCCAATTCTGTAGATGTTTCCCTCGAA
4._GC-01-131-7-08
CCCCAATTCTGTAGATGTTTCCCTCGAA
5._GC-01-131-7-08
CCCCAATTCTGTAGATGTTTCCCTCGAA
6._GC-01-131-7-08
CCCCAATTCTGTAGATGTTTCCCTCGAA
7._CRU_156
__CCAA__CT______GT____CTCGAA
8._CRU_156
__CCAA__CT______GT____CTCGAA
9._CRU_156
__CCAA__CT______GT____CTCGAA
10._CRU_156
__CCAA__CT______GT____CTCGAA
11._CRU_156
__CCAA__CT______GT____CTCGAA
12._RUQ_880
____AGTT________GT______CG__
13._CRU_156
__CTAA__CT______GT____CTCGGG
14._RUQ_880
__GGAA__GGCCGG__AAAAGGGGCCGG

Input profile: CRU_156 RUQ_880

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._CRU_156 RUQ_880

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._CRU_156

54.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

8._CRU_156

54.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

9._CRU_156

54.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

10._CRU_156

54.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

11._CRU_156

54.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._CRU_156

50 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

14._CRU_156 RUQ_880

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484