SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
1._RUQ_1638	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
2._GC-01-089-5-06	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
3._GC-01-089-5-06	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
4._GC-01-089-5-06	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
5._GC-01-089-5-06	TT	CC	CC	GG	TT	GG	CC	CC	AA	CC	AA	GG	TT	CC
6._UF_712	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
7._UF_712	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
8._UF_712	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
9._UF_712	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
10._RUQ_1638	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
11._RUQ_1638	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
12._UF_712	__	__	CC	GG	TT	__	CC	CC	AA	CC	__	__	TT	__
13._RUQ_1683	__	__	CC	__	__	__	__	__	AA	__	AA	__	__	__
14._UF_712	__	__	CC	GG	TT	__	CC	CC	__	CC	__	__	TT	__
15._RUQ_1683	AA	CC	CC	CC	AA	GG	CC	GG	AA	GG	AA	GG	TT	GG
16._MITC-000350	AA	CC	CC	CC	AA	GG	CC	GG	AA	GG	AA	GG	TT	GG
17._MITC-000039	AA	CC	CC	CC	AA	GG	CC	GG	AA	GG	AA	GG	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
1._RUQ_1638	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
2._GC-01-089-5-06	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
3._GC-01-089-5-06	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
4._GC-01-089-5-06	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
5._GC-01-089-5-06	GG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AA	TT	CC	GG
6._UF_712	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
7._UF_712	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
8._UF_712	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
9._UF_712	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
10._RUQ_1638	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
11._RUQ_1638	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
12._UF_712	GG	AA	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG
13._RUQ_1683	__	AA	__	__	GG	__	CC	__	TT	GG	AA	__	CC	GG
14._UF_712	GG	AA	CC	GG	GG	TT	__	CT	__	GG	__	__	__	GG
15._RUQ_1683	__	AA	__	CC	GG	CC	GG	AG	__	CC	AA	AA	CC	CC
16._MITC-000350	__	AA	__	CC	GG	CC	GG	AG	__	CC	AA	AA	CC	CC
17._MITC-000039	__	AA	__	CC	GG	CC	GG	AG	__	CC	AA	AA	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	AA	CC	CC	GG	GG	TT	GG	CC	CC	TT	CC	GG
1._RUQ_1638	GG	TT	AA	CC	CC	GG	GG	TT	GG	CC	CC	TT	CC	GG
2._GC-01-089-5-06	GG	TT	AA	CC	CC	GG	GG	TT	GG	__	CC	TT	CC	GG
3._GC-01-089-5-06	GG	TT	AA	CC	CC	GG	GG	TT	GG	__	CC	TT	CC	GG
4._GC-01-089-5-06	GG	TT	AA	CC	CC	GG	GG	TT	GG	__	CC	TT	CC	GG
5._GC-01-089-5-06	GG	TT	AA	CC	CC	GG	GG	TT	GG	__	CC	TT	__	GG
6._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
7._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
8._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
9._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
10._RUQ_1638	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
11._RUQ_1638	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
12._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	__	GG
13._RUQ_1683	__	__	AA	CC	__	__	__	__	GG	__	__	__	CC	__
14._UF_712	__	TT	AA	__	CC	__	__	__	GG	__	__	TT	CC	GG
15._RUQ_1683	__	AA	AA	__	GG	CC	GG	__	CC	GG	GG	AA	GG	GG
16._MITC-000350	__	AA	AA	__	GG	CC	GG	__	CC	GG	GG	AA	GG	GG
17._MITC-000039	__	AA	AA	__	GG	CC	GG	__	CC	GG	GG	AA	GG	GG

Input profile: UF_712 RUQ_1683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._UF_712 RUQ_1638

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._UF_712 GC-01-089-5-06

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._UF_712 GC-01-089-5-06

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._UF_712 GC-01-089-5-06

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._UF_712 GC-01-089-5-06

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._UF_712

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

7._UF_712

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

8._UF_712

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

9._UF_712

identical
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

10._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._UF_712

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

13._UF_712 RUQ_1683

identical
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._UF_712

95.7 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

44.4 %
36 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

44.4 %
36 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484