SNP Profiles of SPA 16 [COL]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGACCGAACTGGGGAACC
1._RUQ_691
____AC__________AA__GG______
2._RUQ_691
AACCACCC__GGACCGAAAGGGGGAAGG
3._SPA_16_[COL]_Fld#_178_Plt#_2
AACCACCCAGGGACCGAAAGGGGGAAGG
 1516171819202122232425262728
_Input profile
AACCTTGGGGAACCCCTTGGGGTTCCCG
1._RUQ_691
__CC____GGAACC__TTGGGG__CCCG
2._RUQ_691
__CC__CCGGAAGGGG__CCGGAACCCG
3._SPA_16_[COL]_Fld#_178_Plt#_2
__CC__CCGGAAGGGG__CCGGAACCCG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTGTTTCCTTCGAA
1._RUQ_691
____AGCC________GT______CG__
2._RUQ_691
__GGAG__GGCCGG__ACAAGGAACGAA
3._SPA_16_[COL]_Fld#_178_Plt#_2
__GGAG__GGCCGG__ACAAGGAACGAA

Input profile: SPA_16_[COL] RUQ_691

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SPA_16_[COL] RUQ_691

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._SPA_16_[COL] RUQ_691

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._SPA_16_[COL] SPA_16_[COL]_Fld#_178_Plt#_2

52.8 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 178, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484