SNP Profiles of POUND 10 /B   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAAGGCCGGAACCGGCCGGGGAACC
1._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
2._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
3._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
4._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
5._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
6._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
7._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
8._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
9._RUQ_1618
____AAGGCC__AACCGGCC____AA__
10._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
11._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
12._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
13._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
14._GC-08-162-4-05
TTCCAAGGCCGGAACCGGCCGGGGAACC
15._GC-08-163-4-06
TTCCAAGGCCGGAACCGGCCGGGGAACC
16._GC-08-163-4-06
TTCCAAGGCCGGAACCGGCCGGGGAACC
17._GC-08-163-4-06
TTCCCCGTCTGGACCCAACCAGGGAACG
18._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
19._GC-01-115-6-12
CTCCACGTCTAGCCCCAGCTAGGGAACG
20._GC-01-115-6-12
CTCCACGTCTAGCCCCAGCTAGGGAACG
21._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
22._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
23._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
24._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
25._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGGAACG
26._POUND_10_/B
____CCGTCT__ACCCAACC____AA__
27._GC-08-162-4-05
CTCCACGTCTAGCCCCAGCTAGGG__CG
28._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
29._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
30._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
31._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
32._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
33._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
34._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
35._POUND_10_/B
____ACGTCT__CCCCAGCT____AA__
36._POUND_10_/B
____ACGTCT__CCCCAGCT________
 1516171819202122232425262728
_Input profile
AACCCCTTGGAACCCCTTGGGGTTCCCG
1._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
2._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
3._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
4._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
5._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
6._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
7._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
8._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
9._RUQ_1618
AACCCCTTGGAA__CC__GG______CG
10._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
11._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
12._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
13._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
14._GC-08-162-4-05
AACCCCTTGGAACCCCCCGGGGTTCCCG
15._GC-08-163-4-06
AACCCCTTGGAACCCCCCGGGGTTCCCG
16._GC-08-163-4-06
AACCCCTTGGAACCCCCCGGGG__CCCG
17._GC-08-163-4-06
AACCCTGTCGAATTTTCCGGAGTTACCG
18._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
19._GC-01-115-6-12
AGACCTGGGGACCCCTCTGGAGTTACCG
20._GC-01-115-6-12
AGACCTGGGGACCCCTCTGGAGTTACCG
21._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
22._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
23._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
24._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
25._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
26._POUND_10_/B
AACCCTGTCGAA__TT__GG______CG
27._GC-08-162-4-05
AGACCTGGGGACCCCTCTGGAGTTACCG
28._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
29._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
30._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
31._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
32._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
33._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
34._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
35._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
36._POUND_10_/B
AGACCTGGGGAC__CT__GG______CG
 2930313233343536373839404142
_Input profile
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
1._POUND_10_/B
__TTGG__CC______TT____TTGGAA
2._POUND_10_/B
__TTGG__CC______TT____TTGGAA
3._POUND_10_/B
__TTGG__CC______TT____TTGGAA
4._POUND_10_/B
__TTGG__CC______TT____TTGGAA
5._POUND_10_/B
__TTGG__CC______TT____TTGGAA
6._POUND_10_/B
__TTGG__CC______TT____TTGGAA
7._POUND_10_/B
__TTGG__CC______TT____TTGGAA
8._POUND_10_/B
__TTGG__CC______TT____TTGGAA
9._RUQ_1618
__TTGG__CC______TT____TTGGAG
10._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
11._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
12._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
13._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
14._GC-08-162-4-05
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
15._GC-08-163-4-06
CCTTGG__CCGGGGTTTTTTCCTTGGAA
16._GC-08-163-4-06
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
17._GC-08-163-4-06
CCCCAGCTCCGGAGTTTTTTCTCTGGAG
18._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
19._GC-01-115-6-12
CGCTAACCCCGGGGTTGT__CCTTCCAG
20._GC-01-115-6-12
CGCTAACCCCGGGGTTGT__CCTTCCAG
21._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
22._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
23._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
24._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
25._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
26._POUND_10_/B
__CCAG__CC______TT____CTGGAG
27._GC-08-162-4-05
CGCTAACCCCGGGGTTGT__CCTTCCAG
28._POUND_10_/B
__CTAA__CC______GT____TTCCAG
29._POUND_10_/B
__CTAA__CC______GT____TTCCAG
30._POUND_10_/B
__CTAA__CC______GT____TTCCAG
31._POUND_10_/B
__CTAA__CC______GT____TTCCAG
32._POUND_10_/B
__CTAA__CC______GT____TTCCAG
33._POUND_10_/B
__CTAA__CC______GT____TTCCAG
34._POUND_10_/B
__CTAA__CC______GT____TTCCAG
35._POUND_10_/B
__CTAA__CC______GT____TTCCAG
36._POUND_10_/B
__CTAA__CC______GT____TTCCAG

Input profile: POUND_10_/B RUQ_1618

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

3._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

4._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

5._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

6._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

7._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

9._POUND_10_/B RUQ_1618

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

11._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

14._POUND_10_/B GC-08-162-4-05

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._POUND_10_/B GC-08-163-4-06

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._POUND_10_/B GC-08-163-4-06

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._POUND_10_/B GC-08-163-4-06

66.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._POUND_10_/B GC-01-115-6-12

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

20._POUND_10_/B GC-01-115-6-12

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._POUND_10_/B

64.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

27._POUND_10_/B GC-08-162-4-05

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

29._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

31._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

32._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

33._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

34._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

35._POUND_10_/B

56.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

36._POUND_10_/B

54.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484